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Joint Genome Institute, Lawrence Berkeley National Laboratory
- Berkeley, CA
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gatech-genemark/ProtHint
gatech-genemark/ProtHint PublicProtein hint generation pipeline for gene finding in eukaryotic genomes
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Gaius-Augustus/BRAKER
Gaius-Augustus/BRAKER PublicBRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes
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miniprothint
miniprothint PublicMiniprothint selects a set of reliable gene prediction hints from miniprot alignments scored by miniprot boundary scorer.
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orthodb-clades
orthodb-clades PublicGeneration of OrthoDB protein sets for gene prediction experiments
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Gaius-Augustus/GALBA
Gaius-Augustus/GALBA PublicGALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the scenario where high quality proteins from one or several close…
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