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BioFindr

BioFindr is an implementation of the Findr software in Julia. See our paper "Efficient and accurate causal inference with hidden confounders from genome-transcriptome variation data"1 for details of the methods implemented in BioFindr.

If you're new to BioFindr, the separate tutorials website may be helpful.

More details about the methods and their implementation can be found in the documentation.

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Footnotes

  1. Wang L, Michoel T (2017) Efficient and accurate causal inference with hidden confounders from genome-transcriptome variation data. PLoS Comput Biol 13(8): e1005703.