Still chasing down revdeps

tidyverse · Feb 15, 2019 · 3b784cf · 3b784cf
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diff --git a/revdep/README.md b/revdep/README.md
@@ -46,6 +46,9 @@
 |pkgconfig      |2.0.2   |2.0.2      |   |
 |prettyunits    |1.0.2   |1.0.2      |   |
 |progress       |1.2.0   |1.2.0      |   |
+|R.methodsS3    |1.7.1   |1.7.1      |   |
+|R.oo           |1.22.0  |1.22.0     |   |
+|R.utils        |2.8.0   |2.8.0      |   |
 |R6             |2.3.0   |2.3.0      |   |
 |Rcpp           |1.0.0   |1.0.0      |   |
 |rematch        |1.0.1   |1.0.1      |   |
@@ -62,13 +65,14 @@
 
 # Revdeps
 
-## Couldn't check (3)
+## Couldn't check (4)
 
 |package                                  |version |error |warning |note |
 |:----------------------------------------|:-------|:-----|:-------|:----|
 |[DAPAR](problems.md#dapar)               |1.14.5  |1     |        |     |
 |[dynBiplotGUI](problems.md#dynbiplotgui) |1.1.5   |1     |        |     |
 |[lpirfs](problems.md#lpirfs)             |0.1.4   |1     |        |     |
+|[zooaRchGUI](problems.md#zooarchgui)     |1.0.2   |1     |        |     |
 
 ## All (91)
 
@@ -83,7 +87,7 @@
 |[BloodCancerMultiOmics2017](problems.md#bloodcancermultiomics2017) |1.2.0   |      |1       |3    |
 |blorr                                                              |0.2.0   |      |        |     |
 |breathtestcore                                                     |0.4.6   |      |        |     |
-|[chillR](problems.md#chillr)                                       |0.70.12 |1     |        |     |
+|chillR                                                             |0.70.12 |      |        |     |
 |ckanr                                                              |0.1.0   |      |        |     |
 |cNORM                                                              |1.1.5   |      |        |     |
 |CONS                                                               |0.1.1   |      |        |     |
@@ -116,7 +120,7 @@
 |inferr                                                             |0.3.0   |      |        |     |
 |[iotables](problems.md#iotables)                                   |0.4.2   |      |        |1    |
 |[IsoCorrectoR](problems.md#isocorrector)                           |1.0.5   |      |1       |1    |
-|[joinXL](problems.md#joinxl)                                       |1.0.1   |1     |        |     |
+|joinXL                                                             |1.0.1   |      |        |     |
 |jubilee                                                            |0.2.5   |      |        |     |
 |[lpirfs](problems.md#lpirfs)                                       |0.1.4   |1     |        |     |
 |Luminescence                                                       |0.8.6   |      |        |     |

diff --git a/revdep/problems.md b/revdep/problems.md
@@ -73,20 +73,6 @@ Version: 1.2.0
     Package unavailable to check Rd xrefs: ‘vsn’
     ```
 
-# chillR
-
-Version: 0.70.12
-
-## In both
-
-*   checking package dependencies ... ERROR
-    ```
-    Package required but not available: ‘R.utils’
-    
-    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-    manual.
-    ```
-
 # cRegulome
 
 Version: 0.3.0
@@ -398,20 +384,6 @@ Version: 1.0.5
         testdata   5.2Mb
     ```
 
-# joinXL
-
-Version: 1.0.1
-
-## In both
-
-*   checking package dependencies ... ERROR
-    ```
-    Package required but not available: ‘R.utils’
-    
-    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-    manual.
-    ```
-
 # lpirfs
 
 Version: 0.1.4
@@ -758,8 +730,11 @@ Version: 1.2.0
     ```
     Error in re-building vignettes:
       ...
+    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
+      Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
+    Quitting from lines 80-82 (vignettes.Rmd) 
     Error: processing vignette 'vignettes.Rmd' failed with diagnostics:
-    there is no package called ‘BiocManager’
+    there is no package called 'webshot'
     Execution halted
     ```
 
@@ -843,11 +818,51 @@ Version: 1.0.2
 
 ## In both
 
-*   checking package dependencies ... ERROR
+*   checking whether package ‘zooaRchGUI’ can be installed ... ERROR
     ```
-    Package required but not available: ‘spdep’
-    
-    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
-    manual.
+    Installation failed.
+    See ‘/Users/jenny/rrr/readxl/revdep/checks.noindex/zooaRchGUI/new/zooaRchGUI.Rcheck/00install.out’ for details.
     ```
 
+## Installation
+
+### Devel
+
+```
+* installing *source* package ‘zooaRchGUI’ ...
+** package ‘zooaRchGUI’ successfully unpacked and MD5 sums checked
+** R
+** data
+*** moving datasets to lazyload DB
+** inst
+** byte-compile and prepare package for lazy loading
+Error : .onLoad failed in loadNamespace() for 'rjags', details:
+  call: dyn.load(file, DLLpath = DLLpath, ...)
+  error: unable to load shared object '/Users/jenny/rrr/readxl/revdep/library.noindex/zooaRchGUI/rjags/libs/rjags.so':
+  dlopen(/Users/jenny/rrr/readxl/revdep/library.noindex/zooaRchGUI/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib
+  Referenced from: /Users/jenny/rrr/readxl/revdep/library.noindex/zooaRchGUI/rjags/libs/rjags.so
+  Reason: image not found
+ERROR: lazy loading failed for package ‘zooaRchGUI’
+* removing ‘/Users/jenny/rrr/readxl/revdep/checks.noindex/zooaRchGUI/new/zooaRchGUI.Rcheck/zooaRchGUI’
+
+```
+### CRAN
+
+```
+* installing *source* package ‘zooaRchGUI’ ...
+** package ‘zooaRchGUI’ successfully unpacked and MD5 sums checked
+** R
+** data
+*** moving datasets to lazyload DB
+** inst
+** byte-compile and prepare package for lazy loading
+Error : .onLoad failed in loadNamespace() for 'rjags', details:
+  call: dyn.load(file, DLLpath = DLLpath, ...)
+  error: unable to load shared object '/Users/jenny/rrr/readxl/revdep/library.noindex/zooaRchGUI/rjags/libs/rjags.so':
+  dlopen(/Users/jenny/rrr/readxl/revdep/library.noindex/zooaRchGUI/rjags/libs/rjags.so, 10): Library not loaded: /usr/local/lib/libjags.4.dylib
+  Referenced from: /Users/jenny/rrr/readxl/revdep/library.noindex/zooaRchGUI/rjags/libs/rjags.so
+  Reason: image not found
+ERROR: lazy loading failed for package ‘zooaRchGUI’
+* removing ‘/Users/jenny/rrr/readxl/revdep/checks.noindex/zooaRchGUI/old/zooaRchGUI.Rcheck/zooaRchGUI’
+
+```