This Perl script splits a TGCA .maf file into separated sample files and annotate each of them using ANNOVAR (hg19) instaled at /share/apps/ANNOVAR.
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tiagoantonio/maf2anno-split
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############################################################################### # # April 26 2016 # # maf2anno.split # # This Perl script splits a TGCA .maf file into separated sample files and # annotate each of them using ANNOVAR (hg19) instaled at /share/apps/ANNOVAR. # Outputs: ANNOVAR output files and a log file containing the total number of # samples annotated and total number of SNVs annotated. # # # USAGE: perl maf2anno.split <TGCAfile.maf> # # Required modules: IPC::System::Simple, Parallel::ForkManager, List::MoreUtils, # List::Util # # If you have any question or suggestions please contact the author: # # Author: Tiago A. de Souza # tiagoantonio@gmail.com # github.com/tiagoantonio # # Licensed under MIT License # #################################################################################
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This Perl script splits a TGCA .maf file into separated sample files and annotate each of them using ANNOVAR (hg19) instaled at /share/apps/ANNOVAR.
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