biom-io

In order to run large datasets (e.g. Global soil), increase heap space export NODE_OPTIONS="--max-old-space-size=6144" # Increase to 6 GB

Test result, Global soil:

Reading Global Soil dataset to Biom
Taxa: 722682 samples: 3200
toBiom: 11:55.952 (m:ss.mmm)
addReadCounts: 1:00.674 (m:ss.mmm)

Name		Name	Last commit message	Last commit date
Latest commit History 17 Commits
converters		converters
enum		enum
schemas		schemas
server		server
testData		testData
tests		tests
util		util
validation		validation
workers		workers
.gitignore		.gitignore
LICENSE		LICENSE
README.md		README.md
config.js		config.js
jsconfig.json		jsconfig.json
package-lock.json		package-lock.json
package.json		package.json

thomasstjerne/biom-io