Merge pull request #516 from theosanderson/fix-root

Fix a bug introduced recently where the root wasn't correctly annotated with AAs
theosanderson · Sep 6, 2023 · 941f03a · 941f03a · vercel · Sep 6, 2023
2 parents 44e3fb0 + 6011e59
commit 941f03a
Showing 1 changed file with 5 additions and 1 deletion.
diff --git a/taxoniumtools/src/taxoniumtools/ushertools.py b/taxoniumtools/src/taxoniumtools/ushertools.py
@@ -323,7 +323,11 @@ def perform_aa_analysis(self):
                                         pbar, self.nuc_to_codon)
         root_muts = self.create_mutation_like_objects_to_record_root_seq()
         self.tree.root.aa_muts = get_mutations(
-            {}, root_muts, seq, self.cdses, disable_check_for_differences=True)
+            {},
+            root_muts,
+            seq,
+            self.nuc_to_codon,
+            disable_check_for_differences=True)
         self.tree.root.nuc_mutations = root_muts
 
     def load_genbank_file(self, genbank_file):