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27 Open 153 Closed
27 Open 153 Closed
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Issues list

scib.metrics.metrics returns all NaN
#400 opened Mar 21, 2024 by Jiayi-Zheng
Can "Scib" evaluate the integration functionality of Seurat v5 ?
#397 opened Feb 1, 2024 by zhangmiaomiao379
Question on Benchmarking Cell Type Assignments Post-Integration and Concerns about Bias in Results
#393 opened Dec 28, 2023 by MariaRosariaNucera
2
mertric about ASW
#392 opened Dec 8, 2023 by BillyChen123
Questions about the weighted score design of scIB
#391 opened Dec 2, 2023 by HelloWorldLTY
1
use_rep in cluster_optimal_resolution and opt_louvain
#389 opened Nov 5, 2023 by kzkedzierska
AttributeError: can't set attribute 'categories'
#388 opened Oct 29, 2023 by BillyChen123
how to merge and integrate the TPM and raw counts matrix data
#387 opened Sep 11, 2023 by Teich2233
1
Running scib.metrics.metrics() produces dataframe of NaNs
#385 opened Jun 15, 2023 by EvanDMee
1
Comparing metrics from different embeddings
#384 opened Jun 9, 2023 by samfenske
Possibility to report the cLISI score for each cluster?
#383 opened May 25, 2023 by auesro
scanorama does not subset to HVG list
#382 opened Apr 27, 2023 by mbuttner
1
Metrics fail when there are unused labels
#379 opened Mar 1, 2023 by lazappi
1
Update integration methods
#363 opened Jan 9, 2023 by mumichae
2 tasks
cell_cycle returns poor scores on perfect data input
#351 opened Nov 29, 2022 by scottgigante-immunai
4
Missing kBET argument documentation
#336 opened Sep 16, 2022 by lazappi
@mbuttner
Low values for iLISI score
#329 opened Jul 19, 2022 by Mari123i
1
sc.pp.pca -> sc.tl.pca
#319 opened May 22, 2022 by adamgayoso
Incosistent usage of hvg argument in integration.py
#318 opened May 22, 2022 by adamgayoso
1
AssertionError: counts is not a valid key in adata.layers
#314 opened May 19, 2022 by smk5g5
2
Which type of data anndata layers need to comprise to run scib.me.metrics_fast() depending on the integration method used? documentation Improvements or additions to documentation
#300 opened Apr 18, 2022 by antonioggsousa
1
notebook with working tutorial and files documentation Improvements or additions to documentation
#299 opened Apr 18, 2022 by stemangiola
@mumichae
10
Questions about runDESC in the integration part
#298 opened Apr 2, 2022 by HelloWorldLTY
1
Is there any tutorial for scIB documentation Improvements or additions to documentation
#236 opened May 29, 2021 by HelloWorldLTY
1
Tutorials for scIB documentation Improvements or additions to documentation
#182 opened Oct 2, 2020 by mbuttner
1
ProTip! Adding no:label will show everything without a label.