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Honor standard compiler/linker flags #54

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Honor standard compiler/linker flags #54

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15 changes: 3 additions & 12 deletions Makefile
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Original file line number Diff line number Diff line change
@@ -1,43 +1,34 @@
DEST_DIR = ~/bin

CFLAGS = -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing
CFLAGS += -O3 -Wall -Wextra -Wno-unused-result -fno-strict-aliasing
LDLIBS = -lm

ALL = daligner HPC.daligner LAsort LAmerge LAsplit LAcat LAshow LAdump LAcheck LAindex

all: $(ALL)

daligner: LDLIBS += -lpthread
daligner: daligner.c filter.c filter.h align.c align.h DB.c DB.h QV.c QV.h
gcc $(CFLAGS) -o daligner daligner.c filter.c align.c DB.c QV.c -lpthread -lm

HPC.daligner: HPC.daligner.c DB.c DB.h QV.c QV.h
gcc $(CFLAGS) -o HPC.daligner HPC.daligner.c DB.c QV.c -lm

LAsort: LAsort.c align.h DB.c DB.h QV.c QV.h
gcc $(CFLAGS) -o LAsort LAsort.c DB.c QV.c -lm

LAmerge: LAmerge.c align.h DB.c DB.h QV.c QV.h
gcc $(CFLAGS) -o LAmerge LAmerge.c DB.c QV.c -lm

LAshow: LAshow.c align.c align.h DB.c DB.h QV.c QV.h
gcc $(CFLAGS) -o LAshow LAshow.c align.c DB.c QV.c -lm

LAdump: LAdump.c align.c align.h DB.c DB.h QV.c QV.h
gcc $(CFLAGS) -o LAdump LAdump.c align.c DB.c QV.c -lm

LAcat: LAcat.c align.h DB.c DB.h QV.c QV.h
gcc $(CFLAGS) -o LAcat LAcat.c DB.c QV.c -lm

LAsplit: LAsplit.c align.h DB.c DB.h QV.c QV.h
gcc $(CFLAGS) -o LAsplit LAsplit.c DB.c QV.c -lm

LAcheck: LAcheck.c align.c align.h DB.c DB.h QV.c QV.h
gcc $(CFLAGS) -o LAcheck LAcheck.c align.c DB.c QV.c -lm

LAupgrade.Dec.31.2014: LAupgrade.Dec.31.2014.c align.c align.h DB.c DB.h QV.c QV.h
gcc $(CFLAGS) -o LAupgrade.Dec.31.2014 LAupgrade.Dec.31.2014.c align.c DB.c QV.c -lm

LAindex: LAindex.c align.c align.h DB.c DB.h QV.c QV.h
gcc $(CFLAGS) -o LAindex LAindex.c align.c DB.c QV.c -lm

clean:
rm -f $(ALL)
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