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Welcome to the Rosalind HPC GitHub Page!

Rosalind is not yet HIPAA-compliant! No PHI can be stored here yet!

Table of Contents

  1. Getting Started with Linux
    • An introduction to using Linux and the command line
  2. Rosalind Data Flow Architecture
    • Accessing Rosalind and Data Flow schematic for adding and retrieving data
  3. Getting Started with Rosalind HPC
    • Getting started with Rosalind guide. General instructions for best practices on Rosalind, accessing Rosalind, and submitting jobs to Rosalind.
  4. SLURM Task Management
    • Info regarding more in-depth usage of SLURM (interactive runs, status, cancelling/killing several jobs, submitting job arrays, etc...)
  5. Nodes and Queues Available
    • This is particularly important if you are planning on using SAS, MATLAB, or have scripts/programs that require a lot (> 100GB) of RAM or long run times (> 36 hours)
  6. Software Installs
  7. FAQs