Releases
4.0.0
means and covariates & 68 other things!
tbates
released this
26 May 23:51
umx 4.0.0 May 2020
FIXED: umx_score_scale
Fix a bad design decision where I was storing the reversed items in the data returned to the user. Worked for 1 run, but not repeats...
FIXED: umx_long2wide
now looks for zygosity in more than just twin 1 h/t @nathangillespie for catching this case.
NEW: Covariates in twin models for ordinal and continuous manifests!
m1 = umxACE(selVars = "wt", selCovs= "age", sep="_T")
NEW: umxTwinMaker
: Make twin models by specifying just the within-twin paths for one twin
umxTwinMaker handles making twin2, variance components covariances, MZ and DZ groups, makes a umxSuperModel
and runs it!
plot()
and "std= TRUE" work for any model now!
NEW: umxDoCp
Path-based Direction of causation model.
IMPROVED: umxSummaryACE
prints a means table!
including for intercepts only, no means model, and intercepts + covariate betas.
All RAM and twin models gain this also.
IMPROVED plot
for umxACEv
now prints model name on the diagram.
IMPROVED plot
for umxACE
now uses tips for printing.
IMPROVED: FishersMethod
: accepts p-values for meta-analysis in "..." argument.
IMPROVED: namez
handles class(list) objects, returning $ components.
IMPROVED: parameters
supports standardizing parameters (closes #92 ) .
IMPROVED: power.ACE.test
now prints the parameter and value when testing power (closes #111 ).
IMPROVED: umxCompare
includes Delta-AIC.
IMPROVED: umxCP
plot prints model name.
IMPROVED: umxGxE
code to detect mismatched moderators
IMPROVED: umxGxE
code to include co-twin moderator in means model
IMPROVED: umxGxE
simplified algebra
IMPROVED: umxIP
gains report option.
IMPROVED: umxIP
plot prints model name.
IMPROVED: umxSummaryGxEbiv
working, with a note that the whole function is beta. h/t @MikeNeale .
IMPROVED: umxThresholdMatrix
re-implemented l_u_bound
- wasn't working for some time h/t @nathangillespie .
IMPROVED: umxThresholdMatrix
supports leaving all thresholds free with method= "allFree"
h/t @nathangillespie .
IMPROVED: umx_check_names
returns TRUE when no names are entered.
IMPROVED: umx_check
can concatenate extra messages, and is by default polite with messages.
IMPROVED: umx_check
handles ... items better
IMPROVED: umx_is_ordered
can process mxData as well as df.
IMPROVED: umx_make_TwinData
has dzAr.
IMPROVED: umx_make_twin_data_nice
can turn numeric zyg column into human readable "MZMM" etc.
IMPROVED: umx_print
gains option to append to existing file.
IMPROVED: umx_print
gains option to make tables sort-able.
IMPROVED: umx_print
gains option to output content in "both" md and html.
IMPROVED: umx_print
supports report to html.
IMPROVED: umx_rename
now uses "from=, to=" format for renaming columns.
IMPROVED: umx_rename
was using old/replace instead of from/to (and so generating a polite note).
IMPROVED: umx_residualize
now prints the betas (and CIs) of the residualization it performs.
IMPROVED: umx_score_scale
checks input ranges
IMPROVED: umx_score_scale
tell user what the max response is for reversed items if they leave this blank.
IMPROVED: umx_score_scale
Warns user if there are NAs when "score" is totals.
IMPROVED: umx_rename_file
: Perl mode is TRUE (allows lookahead/behind features; default list pattern is NULL.
IMPROVED: umx_rename_file
now ignores file suffix by default.
IMPROVED: umx_rot
can NA the last value.
IMPROVED: umx_var
upgrades input to df (e.g. if you feed it a column, it now works).
IMPROVED: xmu_data_missing
can hint=
to user which dataset had missingness.
IMPROVED: xmu_make_mxData
handles dropping rows, alerting about variance ratios.
IMPROVED: xmu_make_mxData
now handles cov matrix input (added numObs
parameter).
IMPROVED: better labels for output tables.
IMPROVED: standardize on expMean as name of means matrix even when it's a local algebra.
IMPROVED: twin Models print out means now.
HELP: umxACE
improved tutorial, more tips * IMPROVED plot
for umxACE
now prints model name on the diagram.
HELP: umxACE
covariate examples
HELP: umx_explode_twin_names
links for find-ability
HELP: umxACE
residualize examples match
NEW: umxRenameMatrix
wrap up the multiple lines of code needed to modify a matrix in OpenMx.
NEW: umx_str_chars
return selected characters of a string.
NEW: umxTwinUpgradeMeansToCovariateModel
function to add def-based covariates to means in umx twin models.
NEW: xmu_data_missing
helper to drop rows with missing def vars or stop and alert the user to do this.
NEW: xmu_extract_column
to allow mxData
NEW: xmu_twin_add_WeightMatrices
helper.
NEW: xmuDefMean
helper
NEW: xmuDefBetas
helper
NEW xmu_twin_upgrade_selDvs2SelVars
helper.
NEW: xmu_make_TwinSuperModel
handles selCovs
REPLACE: parallel::detectCores
--> imxGetNumThreads
(as OpenMx does).
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