QSM-BackgroundRemoval-LVB-FEM

A Matlab toolbox for Background field removal in Quatitative Susceptibility Mapping, by solving Laplacian Boundary Value problem, using Finite Elements.

How to use

Information about how to use can be found here.

Credits

This code was based on the source code and data for the QSM 2016 Reconstruction Challenge, released by Berkin Bilgic at http://martinos.org/~berkin/software.html.
Matlab functions for meshing and saving data are based in Julio Sotelo's codes. (add website)
Python code to solve problem in FEniCS are based in Hernán Mella's. (add website)
Carlos Milovich
Cristián Tejos

Name		Name	Last commit message	Last commit date
Latest commit History 17 Commits
MEDI_toolbox		MEDI_toolbox
__pycache__		__pycache__
data		data
examples		examples
report		report
results		results
Example_regular_mesh.m		Example_regular_mesh.m
README.md		README.md
TKD.m		TKD.m
compute_rmse.m		compute_rmse.m
dipole_kernel.m		dipole_kernel.m
erode_mask.m		erode_mask.m
generate_folder_name.m		generate_folder_name.m
get_equal_ratio.m		get_equal_ratio.m
get_mask_and_solution_from_LBV.m		get_mask_and_solution_from_LBV.m
get_mesh_faces.m		get_mesh_faces.m
hist_surface_area.m		hist_surface_area.m
hist_volume_elem.m		hist_volume_elem.m
imagesc3d2.m		imagesc3d2.m
interpolate_to_mesh_nodes.m		interpolate_to_mesh_nodes.m
mesh_boundary.m		mesh_boundary.m
mosaic.m		mosaic.m
plot_mesh.m		plot_mesh.m
polyfit3D_NthOrder.m		polyfit3D_NthOrder.m
read_solution_from_VTU.m		read_solution_from_VTU.m
remove_transmit_phase.m		remove_transmit_phase.m
save_mesh_and_data_to_VTU.m		save_mesh_and_data_to_VTU.m
save_mesh_to_VTU.m		save_mesh_to_VTU.m
script.sh		script.sh
simple_erode_mask.m		simple_erode_mask.m
solve_laplace.py		solve_laplace.py
surface_area.m		surface_area.m
unstructured_meshing.m		unstructured_meshing.m

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