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@szczurek-lab

szczurek-lab

Popular repositories

  1. hydramp hydramp Public

    HydrAMP: a deep generative model for antimicrobial peptide discovery

    Jupyter Notebook 28 8

  2. Celloscope Celloscope Public

    Celloscope: a probabilistic model for marker-gene-driven cell type deconvolution in spatial transcriptomics data

    Jupyter Notebook 5 1

  3. SIEVE SIEVE Public

    Joint inference of single-nucleotide variants and cell phylogeny from scDNA-seq.

    Java 4 1

  4. DataFilter DataFilter Public

    Selecting candidate single-nucleotide variant sites with read counts for SIEVE.

    C++ 3 1

  5. SIEVE_benchmark_pipeline SIEVE_benchmark_pipeline Public

    Benchmarking framework for SIEVE.

    Python 3

  6. qupath-spot-utils qupath-spot-utils Public

    Scripts for processing microarray spots in QuPath

    Groovy 2

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