An R script to facilitate the annotation and modification of Imaging Mass Cytometry (IMC) ROI data
Download script
Go to 'releases' above (https://github.com/sydneycytometry/IMC-ROI-annotation/releases) and download source code for the latest version.
Protocols
For usage instructions, Sydney Cytometry users can access the usage protocol at https://wiki.centenary.org.au/display/IMC/Data+Analysis. Non-facility users can access a copy by emailing cytof@sydneycytometry.org.au.
If you use these scripts in your work, please cite this github using the information below. You can cite the specific version that you used in your work.
Ashhurst, T. M. (2019). Imaging Mass Cytometry (IMC) region of interest (ROI) annotation v0.1. GitHub repository. https://github.com/sydneycytometry/IMC-ROI-annotation.