Pinned

1. ENCODE-atac-pipeline-custom ENCODE-atac-pipeline-custom Public

   Custom scripts for pre-processing and post-processing data files for ENCODE ATAC-seq pipeline. This repo is tied to an undisclosed research project so many scripts are not usable outside of the pro…

   Shell

2. fps-var-integration fps-var-integration Public

   Notebooks documenting the analyses done to integrate TF footprinting data from TOBIAS and variant data called from the ATAC-seq and DNAse-seq peaks.

   Jupyter Notebook

3. sufyazi.github.io sufyazi.github.io Public

   Personal website repo.

   HTML 1

4. tfbs-variant-calling-nf tfbs-variant-calling-nf Public

   Repository detailing a Nextflow pipeline to run mpileup variant callling on TF footprints.

   HTML