UniProt Demo

UniProt Demo highlights some of the features of the UniProt API and dsome useful analyses with the available data.

• Free software: MIT license
• Documentation: https://uniprot-demo.readthedocs.io.

Features

• TODO

Installation

To install the module, run:

pip install .

Usage

You can use this module as a library in your Python code:

from uniprot_demo import get_protein_domains

uniprot_id = "P12345"
domains_df = get_protein_domains(uniprot_id)
print(domains_df)

You can also use it as a command line tool:

uniprot-domains P12345

Configuration

You can customize the configuration by creating a config.json file with the following content:

{
  "cache_expiration_seconds": 3600
}

Then, set the MY_UNIPROT_MODULE_CONFIG environment variable to the path of the custom configuration file.

Tests

To run the tests, execute:

python -m unittest discover tests

Credits

This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.