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@stracquadaniolab

Stracquadanio Lab

A data-driven engineering biology research group at the University of Edinburgh.

Pinned

  1. cubseq-nf cubseq-nf Public

    CUBseq analyses codon usage bias from RNA-seq data, producing robust CUB estimates that account for variants transcriptome-wide and in highly expressed genes.

    R 1

  2. baghera baghera Public

    Bayesian Gene Heritability Analysis from GWAS summary statistics

    Python 9

  3. pygna pygna Public

    A Python package for gene network analysis

    Python 32 6

  4. mooda mooda Public

    A DNA design and assembly method based on multi-objective optimization.

    Python 6

  5. quick-rnaseq-nf quick-rnaseq-nf Public

    A basic and quick workflow for differential expression analysis

    Nextflow 1

  6. cookiecutter-workflow-nf cookiecutter-workflow-nf Public

    A standardized directory structure to build workflows using Nextflow.

    Dockerfile 4

Repositories

Showing 10 of 23 repositories
  • openmm-nf Public

    Workflow to measure protein mutant stability with respect to the wild type

    Python 0 0 0 0 Updated May 13, 2024
  • mooda Public

    A DNA design and assembly method based on multi-objective optimization.

    Python 6 MIT 0 0 2 Updated May 3, 2024
  • docker-latex Public

    A full Tex image

    Shell 0 1 0 0 Updated Apr 25, 2024
  • cubseq-nf Public

    CUBseq analyses codon usage bias from RNA-seq data, producing robust CUB estimates that account for variants transcriptome-wide and in highly expressed genes.

    R 1 MIT 0 0 0 Updated Mar 29, 2024
  • scilenzio-yeast-nf Public

    Analysis of transcriptional repression in synthetic yeast chromosome using RNA-seq data (post-sc2.0).

    Nextflow 0 0 0 0 Updated Feb 14, 2024
  • gh-action-setup-nextflow Public

    Setup Nextflow for GitHub Actions.

    0 0 0 0 Updated Sep 28, 2023
  • cookiecutter-workflow-nf Public

    A standardized directory structure to build workflows using Nextflow.

    Dockerfile 4 0 0 0 Updated Jun 29, 2023
  • docs Public

    Lab documentation

    0 0 0 0 Updated Aug 2, 2022
  • spi-nf Public

    The SCRaMbLE Polymer Interaction model (SPI) workflow

    Python 0 0 0 0 Updated Jul 21, 2022
  • pygna Public

    A Python package for gene network analysis

    Python 32 MIT 6 0 1 Updated Jun 22, 2022

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