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@stephenslab

Stephens lab

Research in statistical and computational methods for genetics at the University of Chicago.

Pinned

  1. susieR susieR Public

    R package for "sum of single effects" regression.

    R 164 41

  2. mashr mashr Public

    An R package for multivariate adaptive shrinkage.

    R 87 19

  3. flashr flashr Public

    R package for Empirical Bayes Factor Analysis.

    R 48 11

  4. fastTopics fastTopics Public

    Fast algorithms for fitting topic models and non-negative matrix factorizations to count data.

    R 74 6

  5. ebnm ebnm Public

    R package to fit Empirical Bayes Normal Means model.

    R 11 9

  6. dsc dsc Public

    Repo for Dynamic Statistical Comparisons project

    HTML 11 12

Repositories

Showing 10 of 101 repositories
  • ebnm Public

    R package to fit Empirical Bayes Normal Means model.

    R 11 9 9 1 Updated May 14, 2024
  • mr.mash.alpha Public

    R package implementing methods for multivariate multiple regression with adaptive shrinkage priors.

    R 4 2 0 0 Updated May 14, 2024
  • gbcd Public

    R package for generalized binary covariance decomposition.

    R 1 0 0 0 Updated May 9, 2024
  • mvsusieR Public

    A new model and algorithm for multivariate Bayesian variable selection regression.

    Jupyter Notebook 18 5 24 0 Updated Apr 22, 2024
  • udr Public

    R package implementing empirical Bayes methods for multivariate normal means.

    R 7 1 9 0 Updated Apr 19, 2024
  • poisson.mash.alpha Public

    An R package for Poisson multivariate adaptive shrinkage.

    R 10 1 0 0 Updated Apr 15, 2024
  • fastTopics Public

    Fast algorithms for fitting topic models and non-negative matrix factorizations to count data.

    R 74 6 11 1 Updated Apr 3, 2024
  • susieR Public

    R package for "sum of single effects" regression.

    R 164 41 76 0 Updated Apr 2, 2024
  • fastglmpca Public

    Fast algorithms for GLM-PCA.

    HTML 2 GPL-2.0 0 2 1 Updated Mar 11, 2024
  • fsusieR Public

    Draft package for "Sum of Single Functions" method.

    R 2 1 4 0 Updated Mar 7, 2024