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snp/organisms/human_9606_b147_GRCh37p13/VCF
swiss-create-data
It sounds like a file is no longer available:
Genome build: GRCh37p13 dbSNP build: b147 Downloading rsID merge history... RsMergeArch.bcp.gz: 153MB [00:42, 3.62MB/s] Downloading rsID deletion history... SNPHistory.bcp.gz: 106MB [00:35, 2.98MB/s] Downloading NCBI dbSNP VCF for b147 / GRCh37p13 @ ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606_b147_GRCh37p13/VCF/00-All.vcf.gz 00-All.vcf.gz: 0.00B [00:00, ?B/s] Traceback (most recent call last): File "/usr/local/bin/swiss-create-data", line 22, in <module> main() File "/usr/local/lib/python2.7/dist-packages/swiss/create_data.py", line 671, in main vcf_path = download_dbsnp_vcf(opts.dbsnp_build,opts.genome_build) File "/usr/local/lib/python2.7/dist-packages/swiss/create_data.py", line 129, in download_dbsnp_vcf urlretrieve(url,filename=outpath,reporthook=tqdm_hook(t),data=None) File "/usr/lib/python2.7/urllib.py", line 98, in urlretrieve return opener.retrieve(url, filename, reporthook, data) File "/usr/lib/python2.7/urllib.py", line 247, in retrieve fp = self.open(url, data) File "/usr/lib/python2.7/urllib.py", line 215, in open return getattr(self, name)(url) File "/usr/lib/python2.7/urllib.py", line 552, in open_ftp ftpwrapper(user, passwd, host, port, dirs) File "/usr/lib/python2.7/urllib.py", line 879, in __init__ self.init() File "/usr/lib/python2.7/urllib.py", line 891, in init self.ftp.cwd(_target) File "/usr/lib/python2.7/ftplib.py", line 574, in cwd return self.voidcmd(cmd) File "/usr/lib/python2.7/ftplib.py", line 256, in voidcmd return self.voidresp() File "/usr/lib/python2.7/ftplib.py", line 231, in voidresp resp = self.getresp() File "/usr/lib/python2.7/ftplib.py", line 226, in getresp raise error_perm, resp IOError: [Errno ftp error] 550 snp/organisms/human_9606_b147_GRCh37p13/VCF: No such file or directory
1.1.1
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Command-line used to cause the issue
Program output
It sounds like a file is no longer available:
Swiss version
1.1.1
The text was updated successfully, but these errors were encountered: