GenHub version 0.4.0

Changed

• The genhub-build.py script is now fidibus, and the CLI was updated.
• Pdom, Pcan, and Dqua now default to RefSeq genomes, with Toth Lab and CRG genomes available under labels Pdtl, Pccr, and Dqcr.

Fixed

• The cluster build task now uses -M 0 by default.
• The Registry class was simplified.

Added

• The build script (now fidibus) now has support for custom genomes.
• Sequence IDs are now reported for iLocus and miLocus tables.
• New script for creating a piLocus summary table.
• Recipes for chick pea, cabbage, and soybean.
• Recipes for another mosquito (Aedes aegypti) and a spider mite (non-insect arthropod).
• A --shuffled option to several scripts for reading from *iloci.shuffled.tsv, and improved access from the GenomeDB class.