Failed to install Pinocchio on Jetson Orin #2148
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lwygzh
changed the title
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It looks like you have an issue not directly related to pinocchio itself rather to its dependency. I think the problem is that |
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cmeel-octomap binary packages should be available for python 3.8 on aarch64. I'll double check this on Monday. |
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@lwygzh : just to be sure, could you try again after a |
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Yes, |
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My guess is that the pip version is too old for manylinux_2_28. After a pip upgrade, it should be fine. |
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Bug description
Gives an error when install pinocchio using
pip install pininside an Isaac ROS docker container deployed on a NVIDIA Jetson Orin.Expected behavior
Installs pinocchio successfully.
Reproduction steps
run_dev.shfollowing the steps here to run the docker containerpip install pininside the container.Docker image
See above
Additional context
This is the error message:
python3 -m pip install pin==2.6.21 proxsuite Collecting pin==2.6.21 Downloading pin-2.6.21.tar.gz (61.8 MB) |████████████████████████████████| 61.8 MB 15.2 MB/s Installing build dependencies ... error ERROR: Command errored out with exit status 1: command: /usr/bin/python3 /usr/lib/python3/dist-packages/pip install --ignore-installed --no-user --prefix /tmp/pip-build-env-wy7o9b6f/overlay --no-warn-script-location --no-binary :none: --only-binary :none: -i https://pypi.org/simple -- 'cmeel-boost ~= 1.83.0' 'cmeel-urdfdom[build] >= 3.1.0.3, < 4' 'cmeel[build]' 'hpp-fcl[build] >= 2.3.4, < 4' cwd: None Complete output (296 lines): Collecting cmeel-boost~=1.83.0 Using cached cmeel_boost-1.83.0.tar.gz (4.0 kB) Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing wheel metadata: started Preparing wheel metadata: still running... Preparing wheel metadata: still running... Preparing wheel metadata: still running... Preparing wheel metadata: still running... Preparing wheel metadata: finished with status 'done' Collecting cmeel-urdfdom[build]<4,>=3.1.0.3 Downloading cmeel_urdfdom-3.1.1.1.tar.gz (292 kB) Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing wheel metadata: started Preparing wheel metadata: finished with status 'done' Collecting cmeel[build] Using cached cmeel-0.53.3-py3-none-any.whl (20 kB) Collecting hpp-fcl[build]<4,>=2.3.4 Downloading hpp_fcl-2.4.1.tar.gz (3.2 MB) Installing build dependencies: started Installing build dependencies: still running... Installing build dependencies: still running... Installing build dependencies: still running... Installing build dependencies: still running... Installing build dependencies: still running... Installing build dependencies: still running... Installing build dependencies: still running... Installing build dependencies: still running... Installing build dependencies: still running... Installing build dependencies: still running... Installing build dependencies: finished with status 'error' ERROR: Command errored out with exit status 1: command: /usr/bin/python3 /usr/lib/python3/dist-packages/pip install --ignore-installed --no-user --prefix /tmp/pip-build-env-1tiji5hd/overlay --no-warn-script-location --no-binary :none: --only-binary :none: -i https://pypi.org/simple -- 'cmeel-assimp >= 5.3.1, < 6' 'cmeel-boost ~= 1.83.0' 'cmeel-octomap >= 1.9.8.2, < 2' 'cmeel-qhull >= 8.0.2.1, < 8.0.3' 'cmeel[build]' 'eigenpy[build] >= 3.1, < 4' cwd: None Complete output (254 lines): Collecting cmeel-assimp<6,>=5.3.1 Downloading cmeel_assimp-5.3.1.tar.gz (52.6 MB) Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing wheel metadata: started Preparing wheel metadata: still running... Preparing wheel metadata: still running... Preparing wheel metadata: still running... Preparing wheel metadata: still running... Preparing wheel metadata: still running... Preparing wheel metadata: finished with status 'done' WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProtocolError('Connection aborted.', OSError("(104, 'ECONNRESET')"))': /simple/cmeel-boost/ Collecting cmeel-boost~=1.83.0 Using cached cmeel_boost-1.83.0.tar.gz (4.0 kB) Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing wheel metadata: started Preparing wheel metadata: still running... Preparing wheel metadata: still running... Preparing wheel metadata: still running... Preparing wheel metadata: still running... Preparing wheel metadata: finished with status 'done' Collecting cmeel-octomap<2,>=1.9.8.2 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ProtocolError('Connection aborted.', OSError("(104, 'ECONNRESET')"))': /packages/34/66/a3a9105f2a188bd8c75a3b453e748b9a0a78115be0babc9ac4ba949c2414/cmeel_octomap-1.9.8.2.tar.gz Downloading cmeel_octomap-1.9.8.2.tar.gz (1.7 MB) Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing wheel metadata: started Preparing wheel metadata: finished with status 'error' ERROR: Command errored out with exit status 1: command: /usr/bin/python3 /tmp/tmpfe2m5gwd prepare_metadata_for_build_wheel /tmp/tmptsnph3rn cwd: /tmp/pip-install-e33zyp98/cmeel-octomap Complete output (213 lines): CMake Deprecation Warning at CMakeLists.txt:1 (CMAKE_MINIMUM_REQUIRED): Compatibility with CMake < 3.5 will be removed from a future version of CMake. Update the VERSION argument <min> value or use a ...<max> suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is GNU 9.4.0 -- The CXX compiler identification is GNU 9.4.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- octomap building as Release -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Compile octomap using: make -- Install octomap using: make install -- (be sure to set the correct CMAKE_INSTALL_PREFIX before) -- Compile API-documentation using: make docs -- Configuring done (0.7s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: Boost_NO_WARN_NEW_VERSIONS CMAKE_APPLE_SILICON_PROCESSOR CMEEL_JOBS PYTHON_SITELIB Python3_EXECUTABLE -- Build files have been written to: /tmp/cmeel-m3uzoocm/bld [ 4%] Building CXX object src/math/CMakeFiles/octomath.dir/Vector3.cpp.o [ 5%] Building CXX object src/math/CMakeFiles/octomath.dir/Pose6D.cpp.o [ 5%] Building CXX object src/math/CMakeFiles/octomath.dir/Quaternion.cpp.o [ 5%] Building CXX object src/math/CMakeFiles/octomath-static.dir/Vector3.cpp.o [ 6%] Building CXX object src/math/CMakeFiles/octomath-static.dir/Quaternion.cpp.o [ 8%] Building CXX object src/math/CMakeFiles/octomath-static.dir/Pose6D.cpp.o [ 9%] Linking CXX shared library /tmp/pip-install-e33zyp98/cmeel-octomap/octomap/octomap/lib/liboctomath.so [ 9%] Built target octomath [ 12%] Building CXX object src/CMakeFiles/octomap.dir/AbstractOccupancyOcTree.cpp.o [ 12%] Building CXX object src/CMakeFiles/octomap.dir/AbstractOcTree.cpp.o [ 13%] Building CXX object src/CMakeFiles/octomap.dir/Pointcloud.cpp.o [ 14%] Linking CXX static library /tmp/pip-install-e33zyp98/cmeel-octomap/octomap/octomap/lib/liboctomath.a [ 14%] Built target octomath-static [ 16%] Building CXX object src/CMakeFiles/octomap.dir/ScanGraph.cpp.o [ 17%] Building CXX object src/CMakeFiles/octomap.dir/CountingOcTree.cpp.o [ 18%] Building CXX object src/CMakeFiles/octomap.dir/OcTree.cpp.o [ 20%] Building CXX object src/CMakeFiles/octomap.dir/OcTreeNode.cpp.o [ 21%] Building CXX object src/CMakeFiles/octomap.dir/OcTreeStamped.cpp.o [ 22%] Building CXX object src/CMakeFiles/octomap.dir/ColorOcTree.cpp.o [ 24%] Building CXX object src/CMakeFiles/octomap-static.dir/AbstractOcTree.cpp.o [ 25%] Building CXX object src/CMakeFiles/octomap-static.dir/AbstractOccupancyOcTree.cpp.o [ 27%] Building CXX object src/CMakeFiles/octomap-static.dir/Pointcloud.cpp.o [ 28%] Building CXX object src/CMakeFiles/octomap-static.dir/ScanGraph.cpp.o [ 29%] Building CXX object src/CMakeFiles/octomap-static.dir/CountingOcTree.cpp.o [ 31%] Building CXX object src/CMakeFiles/octomap-static.dir/OcTree.cpp.o [ 32%] Linking CXX shared library /tmp/pip-install-e33zyp98/cmeel-octomap/octomap/octomap/lib/liboctomap.so [ 32%] Built target octomap [ 33%] Building CXX object src/CMakeFiles/octomap-static.dir/OcTreeNode.cpp.o [ 35%] Building CXX object src/CMakeFiles/octomap-static.dir/OcTreeStamped.cpp.o [ 36%] Building CXX object src/CMakeFiles/graph2tree.dir/graph2tree.cpp.o [ 37%] Building CXX object src/CMakeFiles/octomap-static.dir/ColorOcTree.cpp.o [ 39%] Building CXX object src/CMakeFiles/log2graph.dir/log2graph.cpp.o [ 40%] Linking CXX executable /tmp/pip-install-e33zyp98/cmeel-octomap/octomap/octomap/bin/log2graph [ 40%] Built target log2graph [ 41%] Building CXX object src/CMakeFiles/binvox2bt.dir/binvox2bt.cpp.o [ 43%] Building CXX object src/CMakeFiles/bt2vrml.dir/bt2vrml.cpp.o [ 44%] Linking CXX executable /tmp/pip-install-e33zyp98/cmeel-octomap/octomap/octomap/bin/graph2tree [ 44%] Built target graph2tree [ 45%] Building CXX object src/CMakeFiles/edit_octree.dir/edit_octree.cpp.o [ 47%] Linking CXX static library /tmp/pip-install-e33zyp98/cmeel-octomap/octomap/octomap/lib/liboctomap.a [ 47%] Built target octomap-static [ 48%] Building CXX object src/CMakeFiles/convert_octree.dir/convert_octree.cpp.o [ 50%] Linking CXX executable /tmp/pip-install-e33zyp98/cmeel-octomap/octomap/octomap/bin/binvox2bt [ 50%] Built target binvox2bt [ 51%] Building CXX object src/CMakeFiles/eval_octree_accuracy.dir/eval_octree_accuracy.cpp.o [ 52%] Linking CXX executable /tmp/pip-install-e33zyp98/cmeel-octomap/octomap/octomap/bin/bt2vrml [ 54%] Linking CXX executable /tmp/pip-install-e33zyp98/cmeel-octomap/octomap/octomap/bin/edit_octree [ 54%] Built target bt2vrml [ 55%] Building CXX object src/CMakeFiles/compare_octrees.dir/compare_octrees.cpp.o [ 55%] Built target edit_octree [ 56%] Building CXX object src/CMakeFiles/simple_example.dir/simple_example.cpp.o [ 58%] Linking CXX executable /tmp/pip-install-e33zyp98/cmeel-octomap/octomap/octomap/bin/convert_octree [ 58%] Built target convert_octree [ 59%] Building CXX object src/CMakeFiles/normals_example.dir/normals_example.cpp.o [ 60%] Linking CXX executable /tmp/pip-install-e33zyp98/cmeel-octomap/octomap/octomap/bin/eval_octree_accuracy [ 60%] Built target eval_octree_accuracy [ 62%] Building CXX object src/CMakeFiles/intersection_example.dir/intersection_example.cpp.o [ 63%] Linking CXX executable /tmp/pip-install-e33zyp98/cmeel-octomap/octomap/octomap/bin/compare_octrees [ 63%] Built target compare_octrees [ 64%] Building CXX object src/CMakeFiles/octree2pointcloud.dir/octree2pointcloud.cpp.o [ 66%] Linking CXX executable /tmp/pip-install-e33zyp98/cmeel-octomap/octomap/octomap/bin/simple_example [ 67%] Linking CXX executable /tmp/pip-install-e33zyp98/cmeel-octomap/octomap/octomap/bin/octree2pointcloud [ 67%] Built target simple_example [ 68%] Building CXX object src/testing/CMakeFiles/test_raycasting.dir/test_raycasting.cpp.o [ 68%] Built target octree2pointcloud [ 70%] Building CXX object src/testing/CMakeFiles/test_iterators.dir/test_iterators.cpp.o [ 71%] Linking CXX executable /tmp/pip-install-e33zyp98/cmeel-octomap/octomap/octomap/bin/normals_example [ 71%] Built target normals_example [ 72%] Building CXX object src/testing/CMakeFiles/test_io.dir/test_io.cpp.o [ 74%] Linking CXX executable /tmp/pip-install-e33zyp98/cmeel-octomap/octomap/octomap/bin/intersection_example [ 74%] Built target intersection_example [ 75%] Building CXX object src/testing/CMakeFiles/test_changedkeys.dir/test_changedkeys.cpp.o [ 77%] Linking CXX executable /tmp/pip-install-e33zyp98/cmeel-octomap/octomap/octomap/bin/test_raycasting [ 77%] Built target test_raycasting [ 78%] Building CXX object src/testing/CMakeFiles/test_scans.dir/test_scans.cpp.o [ 79%] Linking CXX executable /tmp/pip-install-e33zyp98/cmeel-octomap/octomap/octomap/bin/test_changedkeys [ 79%] Built target test_changedkeys [ 81%] Building CXX object src/testing/CMakeFiles/test_color_tree.dir/test_color_tree.cpp.o [ 82%] Linking CXX executable /tmp/pip-install-e33zyp98/cmeel-octomap/octomap/octomap/bin/test_iterators [ 82%] Built target test_iterators [ 83%] Building CXX object src/testing/CMakeFiles/color_tree_histogram.dir/color_tree_histogram.cpp.o [ 85%] Linking CXX executable /tmp/pip-install-e33zyp98/cmeel-octomap/octomap/octomap/bin/test_scans [ 85%] Built target test_scans [ 86%] Building CXX object src/testing/CMakeFiles/test_mapcollection.dir/test_mapcollection.cpp.o [ 87%] Linking CXX executable /tmp/pip-install-e33zyp98/cmeel-octomap/octomap/octomap/bin/test_io [ 87%] Built target test_io [ 89%] Building CXX object src/testing/CMakeFiles/test_pruning.dir/test_pruning.cpp.o [ 90%] Linking CXX executable /tmp/pip-install-e33zyp98/cmeel-octomap/octomap/octomap/bin/color_tree_histogram [ 90%] Built target color_tree_histogram [ 91%] Building CXX object src/testing/CMakeFiles/test_bbx.dir/test_bbx.cpp.o [ 93%] Linking CXX executable /tmp/pip-install-e33zyp98/cmeel-octomap/octomap/octomap/bin/test_color_tree [ 93%] Built target test_color_tree [ 94%] Building CXX object src/testing/CMakeFiles/unit_tests.dir/unit_tests.cpp.o [ 95%] Linking CXX executable /tmp/pip-install-e33zyp98/cmeel-octomap/octomap/octomap/bin/test_mapcollection [ 95%] Built target test_mapcollection [ 97%] Linking CXX executable /tmp/pip-install-e33zyp98/cmeel-octomap/octomap/octomap/bin/test_bbx [ 97%] Built target test_bbx [ 98%] Linking CXX executable /tmp/pip-install-e33zyp98/cmeel-octomap/octomap/octomap/bin/test_pruning [ 98%] Built target test_pruning [100%] Linking CXX executable /tmp/pip-install-e33zyp98/cmeel-octomap/octomap/octomap/bin/unit_tests [100%] Built target unit_tests Running tests... Test project /tmp/cmeel-m3uzoocm/bld Start 4: InsertScan Start 1: MathVector Start 2: MathPose Start 3: InsertRay 1/15 Test #1: MathVector ....................... Passed 0.00 sec Start 6: StampedTree 2/15 Test #2: MathPose ......................... Passed 0.00 sec Start 7: OcTreeKey 3/15 Test #7: OcTreeKey ........................ Passed 0.00 sec Start 8: test_scans 4/15 Test #8: test_scans ....................... Passed 0.13 sec Start 9: test_raycasting 5/15 Test #4: InsertScan ....................... Passed 0.62 sec Start 5: ReadGraph 6/15 Test #5: ReadGraph ........................ Passed 0.02 sec Start 10: test_io 7/15 Test #3: InsertRay ........................ Passed 0.98 sec Start 11: test_pruning 8/15 Test #11: test_pruning ..................... Passed 0.05 sec Start 12: test_iterators 9/15 Test #6: StampedTree ...................... Passed 1.05 sec Start 13: test_mapcollection 10/15 Test #10: test_io .......................... Passed 0.54 sec Start 14: test_color_tree 11/15 Test #14: test_color_tree ..................***Failed 0.10 sec test failed: 3431!=1034 in /tmp/pip-install-e33zyp98/cmeel-octomap/octomap/octomap/src/testing/test_color_tree.cpp, line 52 Start 15: test_bbx 12/15 Test #15: test_bbx ......................... Passed 0.00 sec 13/15 Test #13: test_mapcollection ............... Passed 0.24 sec 14/15 Test #12: test_iterators ................... Passed 0.61 sec 15/15 Test #9: test_raycasting .................. Passed 1.59 sec 93% tests passed, 1 tests failed out of 15 Total Test time (real) = 1.74 sec The following tests FAILED: 14 - test_color_tree (Failed) Errors while running CTest make: *** [Makefile:91: test] Error 8 Traceback (most recent call last): File "/tmp/tmpfe2m5gwd", line 126, in prepare_metadata_for_build_wheel hook = backend.prepare_metadata_for_build_wheel AttributeError: module 'cmeel' has no attribute 'prepare_metadata_for_build_wheel' During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/tmp/tmpfe2m5gwd", line 280, in <module> main() File "/tmp/tmpfe2m5gwd", line 263, in main json_out['return_val'] = hook(**hook_input['kwargs']) File "/tmp/tmpfe2m5gwd", line 130, in prepare_metadata_for_build_wheel return _get_wheel_metadata_from_wheel(backend, metadata_directory, File "/tmp/tmpfe2m5gwd", line 159, in _get_wheel_metadata_from_wheel whl_basename = backend.build_wheel(metadata_directory, config_settings) File "/tmp/pip-build-env-ji3vfh3k/overlay/lib/python3.8/site-packages/cmeel/build.py", line 26, in build_wheel return build_impl(wheel_directory, editable=False) File "/tmp/pip-build-env-ji3vfh3k/overlay/lib/python3.8/site-packages/cmeel/impl.py", line 107, in build_impl launch_tests(True, run_tests and not run_tests_after_install, pyproject, build) File "/tmp/pip-build-env-ji3vfh3k/overlay/lib/python3.8/site-packages/cmeel/utils.py", line 231, in launch_tests check_call(cmd, env=test_env) File "/usr/lib/python3.8/subprocess.py", line 364, in check_call raise CalledProcessError(retcode, cmd) subprocess.CalledProcessError: Command '['cmake', '--build', '/tmp/cmeel-m3uzoocm/bld', '-t', 'test']' returned non-zero exit status 2. ---------------------------------------- ERROR: Command errored out with exit status 1: /usr/bin/python3 /tmp/tmpfe2m5gwd prepare_metadata_for_build_wheel /tmp/tmptsnph3rn Check the logs for full command output. ---------------------------------------- ERROR: Command errored out with exit status 1: /usr/bin/python3 /usr/lib/python3/dist-packages/pip install --ignore-installed --no-user --prefix /tmp/pip-build-env-1tiji5hd/overlay --no-warn-script-location --no-binary :none: --only-binary :none: -i https://pypi.org/simple -- 'cmeel-assimp >= 5.3.1, < 6' 'cmeel-boost ~= 1.83.0' 'cmeel-octomap >= 1.9.8.2, < 2' 'cmeel-qhull >= 8.0.2.1, < 8.0.3' 'cmeel[build]' 'eigenpy[build] >= 3.1, < 4' Check the logs for full command output. ---------------------------------------- ERROR: Command errored out with exit status 1: /usr/bin/python3 /usr/lib/python3/dist-packages/pip install --ignore-installed --no-user --prefix /tmp/pip-build-env-wy7o9b6f/overlay --no-warn-script-location --no-binary :none: --only-binary :none: -i https://pypi.org/simple -- 'cmeel-boost ~= 1.83.0' 'cmeel-urdfdom[build] >= 3.1.0.3, < 4' 'cmeel[build]' 'hpp-fcl[build] >= 2.3.4, < 4' Check the logs for full command output.System
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