update to ss3sim repo in .yml in create pull request step; #2
Workflow file for this run
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| # This updates the ss3sim binaries and bumps the version | ||
| # according to file names and specification in the ss3sim | ||
| # and ssmse. | ||
| # Note that this should only be run manually for now when | ||
| # there are definitely updates, as the version number will | ||
| # be changed if the workflow is run, even if there is no | ||
| # change to the executables. | ||
| # See additional documentation on versioning in a comment | ||
| # later in the workflow. | ||
| name: Update SS3 version in R package | ||
| on: | ||
| workflow_call: | ||
| workflow_dispatch: | ||
| jobs: | ||
| update-ss3-version: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - name: Set up Git repository | ||
| uses: actions/checkout@v3 | ||
| - name: Get the latest stock synthesis binaries | ||
| run: | | ||
| curl https://api.github.com/repos/nmfs-stock-synthesis/stock-synthesis/releases/latest | grep "browser_download_url" | grep -Eo 'https://[^\"]*' | xargs wget | ||
| - name: Get the link to the latest release (including version number) | ||
| id: get-link-to-release | ||
| run: | | ||
| link_to_release=$(curl https://api.github.com/repos/nmfs-stock-synthesis/stock-synthesis/releases/latest | grep "html_url" | grep 'releases' | grep -Eo 'https://[^\"]*') | ||
| release_digits=$(echo "${link_to_release}" | sed 's/https\:\/\/github\.com\/nmfs-stock-synthesis\/stock-synthesis\/releases\/tag\/v3\.30\.//') | ||
| echo "link_to_release=${link_to_release}" >> $GITHUB_OUTPUT | ||
| echo "release_digits=${release_digits}" >> $GITHUB_OUTPUT | ||
| # Note on versioning in ss3sim and SSMSE: | ||
| # x.yy.z where yy is the "patch" version of the SS3.30 executable, | ||
| # e.g., ss3sim will be 1.19.0. This will allow the patch version of {ss3sim} | ||
| # to increment while 1.19 will stay the same while we are using SS3.30.19. | ||
| # That way users can always know what version of Stock Synthesis is being | ||
| # referenced without needing to run the executable. Thus, major version is for | ||
| # "major" breaking changes in {ss3sim}, "minor" matches the "patch" version of | ||
| # SS3 being used, and "patch" is for small changes to {ss3sim} while using a | ||
| # given version of SS3. | ||
| - name: Bump version using sed. Match SS3 version followed by 0 | ||
| run: | | ||
| sed -r -i 's/(Version: ?[0-9]+\.)([0-9]+\.[0-9+])/echo "\1${{ steps.get-link-to-release.outputs.release_digits }}.0"/ge' DESCRIPTION | ||
| - name: Move exes to the right location | ||
| run: | | ||
| mv ss_linux inst/bin/Linux64/ss | ||
| mv ss_win.exe inst/bin/Windows64/ss.exe | ||
| mv ss_osx inst/bin/MacOS/ss | ||
| rm ss_opt_osx | ||
| rm ss_opt_linux | ||
| rm ss_opt_win.exe | ||
| - name: Change permissions for mac and linux exes | ||
| run: | | ||
| chmod a+x inst/bin/Linux64/ss | ||
| chmod a+x inst/bin/MacOS/ss | ||
| - name: Create Pull Request | ||
| uses: peter-evans/create-pull-request@v3 | ||
| with: | ||
| commit-message: | | ||
| Update ss3 binaries | ||
| From ${{ steps.get-link-to-release.outputs.link_to_release }} | ||
| branch: update-ss3 | ||
| title: 'Update ss3 binaries' | ||
| body: | | ||
| Auto-generated by [update-ss3-version.yml][1]. Binaries from ${{ steps.get-link-to-release.outputs.link_to_release }}. | ||
| # [1]: https://github.com/ss3sim/ss3sim/tree/main/.github/workflows/update-ss3-version.yml | ||
| [1]: https://github.com/ss3sim/ss3sim/tree/transfer-workflow/.github/workflows/update-ss3-version.yml | ||
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