Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Implement input API and processor for EVEX database #1393

Open
wants to merge 34 commits into
base: master
Choose a base branch
from

Conversation

bgyori
Copy link
Member

@bgyori bgyori commented Sep 28, 2022

This PR implements an API and processor for the EVEX text mining database (http://evexdb.org/). The approach is to use the "network" relations file as the backbone of INDRA Statement extraction. However, to gather evidence text, raw agent text and coordinates, and other metadata, it is necessary to find support for each relation in raw standoff output files. This latter part is considerably complicated since network relations aren't explicitly linked to elements of the standoff output. The processor produces around 620k Statements (each with a single Evidence), and more than 99% of these contain evidence text meaning these were successfully identifier from standoff files.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

None yet

1 participant