A busy year and I forgot to make a new release, so now that PROSSTT is published here it is.
major changes:
- new sampling strategies (density sampling, velocity sampling)
- can simulate non-informative genes
- added a lot of example notebooks
- cell size now can vary
- added option for delayed commitment branching ("probabilistic branching")
- PROSSTT can learn hyperparameters from data now
minor changes:
- updated documentation, moved to readthedocs
- now supports newick input and file format (thanks @scottgigante)
- branch naming works better now
- improved how expression programs get sampled, can mostly avoid extreme cases that distort sims