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@skuschel skuschel released this 14 Jan 21:27
· 217 commits to master since this release
v0.4
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Learn about vigilant mode.

Highlights

  • Improved interoperability with numpy:
    • Field now understands most of numpy's broadcasting
    • Field can be used as an argument to numpy's ufuncs.
  • Import and export routines for Field incuding vtk, compatible with paraview.
  • Coordinate mapping and transform for Field.
  • Brand new Multispecies.__call__ interface: This takes an expression, which is evaluated by numexr, increasing the speed of per-particle scalar computations strongly. It's also really user-friendly.

Incompatible adjustments to previous version

  • postpic.Field method exporttocsv is removed. Use export instead.
  • postpic.Field method transform is renamed to map_coordinates, matching the underlying scipy-function.
  • postpic.Field method mean has now an interface matching ndarray.mean. This means that, if the axis argument is not given, it averages across all axes instead the last axis.
  • postpic.Field.map_coordinates applies now the Jacobian determinant of the transformation, in order to preserve the definite integral.
    In your code you will need to turn calls to Field.transform into calls to Field.map_coordinates and set the keyword argument preserve_integral=False to get the old behaviour.
  • postpic.MultiSpecies.createField has now keyword arguments (bins, shape), which replace the corresponding entries from the optargsh dictionary. The use of theoptargsh keyword argument has been deprecated.
  • The functions MultiSpecies.compress, MultiSpecies.filter, MultiSpecies.uncompress and ParticleHistory.skip return a new object now. Before this release, they modified the current object. Assuming ms is a MultiSpecies object, the corresponding adjustemens read:

    old: ms.filter('gamma > 2')

    new: ms = ms.filter('gamma > 2')
  • plotter_matplotlib has a new default symmetric colormap

Other improvements and new features

  • Overload of the ~ (invert) operator on postpic.MultiSpecies. If ms is a MultiSpecies object with filtered particles (created by the use of compress or filter), then ~ms inverts the selection of particles.
  • postpic.Field has methods .loadfrom and .saveto. These can be used to save a Field to a .npz file for later use. Use .loadfrom to load a Field object from such a file. All attributes of the Field are restored.
  • postpic.Field has methods .export and .import. These are used to export fields to and import fields from foreign file formats such as .csv, .vtk, .png, .tif, .jpg. It is not guaranteed to get all attributes back after .exporting and than .importing a Field. Some formats are not available for both methods.
  • postpic has a new function time_profile_at_plane that 'measures' the temporal profile of a pulse while passing through a plane
  • postpic has a new function unstagger_fields that will take a set of staggered fields and returns the fields after removing the stagger
  • postpic has a new function export_vector_vtk that takes up to three fields and exports them as a vector field in the .vtk format
  • postpic has a new function export_scalars_vtk that takes up to four fields and exports them as multiple scalar fields on the same grid in the .vtk format
  • postpic.Field works now with all numpy ufuncs, also with ufunc.reduce, ufunc.outer, ufunc.accumulate and ufunc.at
  • postpic.Field now supports broadcasting like numpy arrays, for binary operators as well as binary ufunc operations
  • postpic.Field has methods .swapaxes, .transpose and properties .T and ndim compatible to numpy.ndarray
  • postpic.Field has methods all, any, max, min, prod, sum, ptp, std, var, mean, clip compatible to numpy.ndarray
  • postpic.Field has a new method map_axis_grid for transforming the coordinates only along one axis which is simpler than map_coordinates, but also takes care of the Jacobian
  • postpic.Field has a new method autocutout used to slice away close-to-zero regions from the borders
  • postpic.Field has a new method fft_autopad used to pad a small number of grid points to each axis such that the dimensions of the Field are favourable to FFTW
  • postpic.Field has a new method adjust_stagger_to to adjust the grid origin to match the grid origin of another field
  • postpic.Field has a new method phase to get the unwrapped phase of the field
  • postpic.Field has a new method derivative to calculate the derivative of a field
  • postpic.Field has new methods flip and rot90 similar to np.flip() and np.rot90()
  • postpic.Field.topolar has new defaults for extent and shape
  • postpic.Field.integrate now uses the simpson method by default
  • postpic.Field.integrate now has a new 'fast' method that uses numexpr, suitable for large datasets
  • New module postpic.experimental to contain experimental algorithms for your reference. These algorithms are not meant to be useable as-is, but may serve as recipes to write your own algorithms.
  • k-space reconstruction from EPOCH dumps has greatly improved accuracy due to a new algorithm correctly incorporating the frequency response of the implicit linear interpolation performed by EPOCH's half-steps
  • plotter_matplotlib.plotField allows to override aspect option to imshow
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