Extract information from GO file

This python script will extract information about the BP, MF, CC information for the input gene_ID

Gene Information Extractor

This repository contains a Python script for extracting gene information from a given dataset. The script takes two CSV files as input: one containing gene information and another containing a list of gene IDs to query. It then outputs the corresponding gene annotations for each gene ID.

Prerequisites

• Python 3

Usage

python3 get_info.py info_BP.csv gene_ID.csv output.csv

• info_BP.csv: CSV file containing gene information with annotations.
• gene_ID.csv: CSV file containing a list of gene IDs to query.
• output.csv: Output file to store the gene annotations.

Code Improvement

The code has been improved with the following changes:

• Modularized the code into functions for better readability and reusability.
• Used the csv module for reading and writing CSV files.
• Ensured proper file handling using the with statement.
• Added error handling for incorrect command-line arguments.
• Created separate functions for transforming the CSV information into a dictionary and processing the query list.
• Utilized the setdefault method to simplify dictionary initialization.

License

This project is licensed under the MIT License.

Feel free to modify the README file according to your needs and add any additional information about the project or usage instructions.