variantstore

Minimal variant store service (no samples or genotypes).

Connects to a mysql server loaded with variant information.

Deployment

Containerized App available at: https://hub.docker.com/r/shusson/variantstore

Example deployment using docker-compose

See docker/.env-example for deployment environment configuration

Take a copy .env-example, edit it and source it

cd docker
cp .env-example .env
vi .env
source .env

Start services

docker-compose up -d

Optional - Load data

cd data
docker-compose up

Backing up sql data

docker run --rm -v dockervs_data-volume:/tmp -v $(pwd):/backup ubuntu tar cvf /backup/backup.tar /tmp