Algorithm

RobustNetwork.GECNA

Maintainer

Cen Wu wucen@ksu.edu

Publication

Robust network-based analysis of the associations between gene expressions and copy number variations (2017). Manuscript.

Usage

a) The folder Robust contains codes for the 4 robust approaches.

• ex1.R: Main function
• A1.r: Approach A1
• A2.r: Approach A2
• A3.r: Approach A3
• A4.r: Approach A4
• functions.r: Functions for robust approaches
• generator.r: Data generating function
• beta.csv: The coefficient matrix
• quicksort.so: Quick sort compiled under Linux

b) The folder NonRobust contains codes for the 4 non-robust approaches.

• ex1.R: Main function
• A5.r: Approach A5
• A6.r: Approach A6
• A7.r: Approach A7
• A8.r: Approach A8
• functions.r: Functions for non-robust approaches
• generator.r: Data generating function
• beta.csv: The coefficient matrix