GitHub - shainalu/spatial_rep: All Jupyter notebooks and python scripts for "Replicability of spatial gene expression atlas data from the adult mouse brain."

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Name		Name	Last commit message	Last commit date
Latest commit History 29 Commits
01_datafilterST.ipynb		01_datafilterST.ipynb
02_allbyallST.ipynb		02_allbyallST.ipynb
03_allbyallST.py		03_allbyallST.py
04_heatmapST.ipynb		04_heatmapST.ipynb
05_datafilterABA.ipynb		05_datafilterABA.ipynb
06_allbyallABA.py		06_allbyallABA.py
07_heatmapABA.ipynb		07_heatmapABA.ipynb
08_allbyallfollowups.ipynb		08_allbyallfollowups.ipynb
09_crossdataset.ipynb		09_crossdataset.ipynb
10_crossdataset.py		10_crossdataset.py
11_crossplots.ipynb		11_crossplots.ipynb
12_CFScrossdataset.ipynb		12_CFScrossdataset.ipynb
13_CFScrossdataset.py		13_CFScrossdataset.py
14_CFScombinefiles.ipynb		14_CFScombinefiles.ipynb
15_CFScrossplots.ipynb		15_CFScrossplots.ipynb
16_planecrossdataset.ipynb		16_planecrossdataset.ipynb
17_planecrossdataset.py		17_planecrossdataset.py
18_planecrossplots.ipynb		18_planecrossplots.ipynb
19_AUROCbydistance.ipynb		19_AUROCbydistance.ipynb
20_onetoall.ipynb		20_onetoall.ipynb
21_onetoall.py		21_onetoall.py
22_onetoallplots.ipynb		22_onetoallplots.ipynb
23_miscplots.ipynb		23_miscplots.ipynb
24_lowdim.ipynb		24_lowdim.ipynb
25_permuteplots.ipynb		25_permuteplots.ipynb
26_singlegeneclassifiers.ipynb		26_singlegeneclassifiers.ipynb
27_singlegenemodel.ipynb		27_singlegenemodel.ipynb
28_singlegenemodel.py		28_singlegenemodel.py
29_singlegeneplots.ipynb		29_singlegeneplots.ipynb
30_borderexprs.ipynb		30_borderexprs.ipynb
31_batch.ipynb		31_batch.ipynb
32a_batchcrossdatasetABAtoST.py		32a_batchcrossdatasetABAtoST.py
32b_batchcrossdatasetSTtoABA.py		32b_batchcrossdatasetSTtoABA.py
33a_areabatchcrossdataset.py		33a_areabatchcrossdataset.py
34_batchcrossplots.ipynb		34_batchcrossplots.ipynb
35_crossval.ipynb		35_crossval.ipynb
36a_STcrossval.py		36a_STcrossval.py
36b_ABAcrossval.py		36b_ABAcrossval.py
37_CVplots.ipynb		37_CVplots.ipynb
38_planecrossdataset_CV.ipynb		38_planecrossdataset_CV.ipynb
38b_planecrossdatasetCV.py		38b_planecrossdatasetCV.py
39_planeCVplots.ipynb		39_planeCVplots.ipynb
40_multiclass.ipynb		40_multiclass.ipynb
41a_STOVRmulticlass.py		41a_STOVRmulticlass.py
41b_ABAOVRmulticlass.py		41b_ABAOVRmulticlass.py
42_OVRplots.ipynb		42_OVRplots.ipynb
43_OVR2fcn.ipynb		43_OVR2fcn.ipynb
44a_STOVR2.py		44a_STOVR2.py
44b_ABAOVR2.py		44b_ABAOVR2.py
45_OVRplots2.ipynb		45_OVRplots2.ipynb
46a_KNNST.py		46a_KNNST.py
46b_KNNABA.py		46b_KNNABA.py
47_KNNplots.ipynb		47_KNNplots.ipynb
fig2ab.png		fig2ab.png
fig3abc.png		fig3abc.png
fig4abcd.png		fig4abcd.png
fig5ab.png		fig5ab.png
index.html		index.html