Validation #1342
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| name: Validation | |
| on: | |
| schedule: | |
| # Run at the end of every day | |
| - cron: "0 0 * * *" | |
| # manual trigger | |
| workflow_dispatch: | |
| jobs: | |
| validation_suite: | |
| # This workflow only runs on the origin org | |
| if: github.repository_owner == 'sgkit-dev' | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: google-github-actions/setup-gcloud@v0 | |
| with: | |
| project_id: ${{ secrets.GCP_PROJECT_ID }} | |
| service_account_key: ${{ secrets.GCP_SA_KEY }} | |
| export_default_credentials: true | |
| - name: Download public test data (real HapMap data) | |
| run: gsutil -u $GCLOUD_PROJECT cp gs://sgkit-data/validation/hapmap_JPT_CHB_r23a_filtered.zip /tmp/ | |
| - name: Validate PC Relate | |
| run: ./validation/gwas/method/pc_relate/run.sh /tmp/hapmap_JPT_CHB_r23a_filtered.zip |