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Thoroughly Caffeinated
☕
Thoroughly Caffeinated
92 followers · 50 following

Achievements

Achievement: QuickdrawAchievement: Mars 2020 ContributorAchievement: Arctic Code Vault ContributorAchievement: Pull Sharkx2
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Achievements

Achievement: QuickdrawAchievement: Mars 2020 ContributorAchievement: Arctic Code Vault ContributorAchievement: Pull Sharkx2
BetaSend feedback

Highlights

Organizations

@GordonLab @ClinDesk @TheMITTech @BradnerLab @mit @Chaudhuri-Lab @mcwdsi
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semenko/README.md

Hi there! 👋

I'm Nick Semenkovich (semenko), a physician scientist and founding member of the Medical College of Wisconsin's Data Science Institute with a passion for software & infrastructure, information security, and clinical medicine. I spend most of my time developing deep learning models for analysis of cell-free DNA 🧬. You can also find me at https://nick.semenkovich.com.

Pinned

  1. serpent-methylation-pipeline serpent-methylation-pipeline Public

    An efficient, documented, reproducible Snakemake methylation analysis pipeline for BS-seq and EM-seq samples, including cfDNA.

    Python 7 2

  2. sts-risk-calculator-cli sts-risk-calculator-cli Public

    A Python command line tool to query the Society of Thoracic Surgeons (STS) Adult Cardiac Risk Calculator API with bulk patient records.

    Python 4

  3. celfie-simplified celfie-simplified Public

    Forked from christacaggiano/celfie

    A quick overhaul of CelFiE — cfDNA cell type of origin estimation

    Jupyter Notebook

  4. chrome-status-monitor-for-google-wifi chrome-status-monitor-for-google-wifi Public

    A Chrome Extension to monitor Google Wifi (or OnHub) status.

    JavaScript 9 3

  5. chrome-limit-history-lifetime chrome-limit-history-lifetime Public

    Persistent history entries are annoying. This Chrome extension limits history entries to a user-adjustable value.

    JavaScript 8

  6. EFForg/https-everywhere EFForg/https-everywhere Public archive

    A browser extension that encrypts your communications with many websites that offer HTTPS but still allow unencrypted connections.

    JavaScript 3.4k 1.1k