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PodPlot

Dependencies

  • Python3
  • Matplotlib

Usage

  1. Make a fasta/fastq index with samtools.
  2. List the index files:
$ cat fai.fofn
reads.1.fasta.fai	Shadowfax
reads.2.fasta.fai	Snowmane	
reads.3.fasta.fai	Bill
  1. python3 podplot.py fai.fofn or python3 podplot.py -g 1500000000 fai.fofn

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Plot coverage or percent of total sequence as a function of minimum read length

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