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Version 4.4.0

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@saketkc saketkc released this 28 Sep 14:06
· 1572 commits to master since this release
d9f09de

Added

  • Added parallelization support with speed improvements for PrepSCTFindMarkers
  • Fix bug in LoadNanostring(#7566)

Changes

  • Fix bug in as.Seurat.SingleCellExperiment() (#6692)
  • Support for Visium probe information introduced in Spaceranger 2.1 (#7141)
  • Add LoadCurioSeeker to load sequencing-based spatial datasets generated using the Curio Seeker
  • Fix fold change calculation for assays (#7095)
  • Fix pt.size bug when rasterization is set to true (#7379)
  • Fix FoldChange and FindMarkers to support all normalization approaches (#7115,#7110,#7095,#6976,#6654,#6701,#6773, #7107)
  • Fix for handling newer ParseBio formats in ReadParseBio (#7565)
  • Fix for handling rasterization by default (#7842)
  • Fix sce object conversion by @timoast in #6771
  • Fix(Xenium): load renamed feature by @jsicherman in #6986
  • keep.scale for SpatialPlot/SpatialFeaturePlot by @samuel-marsh in #6905
  • spaceranger 2.1 update by @stephenwilliams22 in #7141
  • update ReadParseBio to be compatible with latest split-pipe v1.1.0 by @epapalexi in #7565
  • Correct lost gene expression column when loading NanoString CosMx data by @mtgregory in #7566

New Contributors

Full Changelog: v4.3.0...v4.4.0