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Version 5.1.0

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@dcollins15 dcollins15 released this 10 May 20:15
v5.1.0
1549dcb
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GPG key ID: B5690EEEBB952194
Learn about vigilant mode.

Changes

  • Updated interactive SpatialDimPlots to display spatial coordinates
  • Updated BuildClusterTree to PseudobulkExpression(..., method = "aggregate") instead of AverageExpression
  • Fixed SpatialPlot to properly handle images with shared cells
  • Added cluster.name parameter to BuildNicheAssay
  • Added VisiumV2 class, inherits SeuratObject::FOV, returned by Load10X_Spatial
  • Updated Load10X_Spatial to support loading Visium HD datasets - added bin.size parameter
  • Updated Read10X_Coordinates to handle new tissue_coordinates.parquet files
  • Added shape parameter to SpatialPlot and wrappers: SpatialFeaturePlot and SpatialDimPlot
  • Added image.scale parameter to SpatialPlot and related functions: SpatialFeaturePlot/ISpatialFeaturePlot and SpatialDimPlot/ISpatialDimPlot
  • Restored image.name parameter to Read10X_Image
  • Added scale parameter to Radius.VisiumV1
  • Fixed calculation of spot.radius attribute for VisiumV1 instance returned by Read10X_Image — replace scale.factors$fiducial with scale.factors$spot
  • Added Read10X_Coordinates and Read10X_ScaleFactors
  • Fixed SpatialPlot to properly handle mutli-assay Seurat instances
Assets 2