Skip to content

Pull requests: samtools/htslib

New pull request New
26 Open 1,055 Closed
26 Open 1,055 Closed
Author
Filter by author
Label
Filter by label
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Milestones
Filter by milestone
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

Add an inline version of bgzf_read for small reads.
#1772 opened Apr 19, 2024 by jkbonfield Loading…
@daviesrob
11
Increase the input block size for bgzip.
#1768 opened Apr 9, 2024 by jkbonfield Loading…
1
@daviesrob
2
Demo / sample code update
#1666 opened Aug 21, 2023 by vasudeva8 Loading…
@jkbonfield
49
Add VCF/BCF support for POS=0 coordinate
#1573 opened Mar 1, 2023 by pd3 Loading…
1
5
Warn if bgzf_getline() returned apparently UTF-16-encoded text
#1487 opened Aug 1, 2022 by jmarshall Loading…
@daviesrob
6
Proposal to add hts_log callback function and hts_log_set_logger()
#1414 opened Mar 23, 2022 by jmarshall • Draft
@daviesrob
2
Progress and Cancelation for Indexing
#1379 opened Jan 12, 2022 by BickfordA Loading…
11
Iteration over SAM header lines and header expression filtering
#1351 opened Nov 2, 2021 by jmarshall • Draft
@whitwham
2
Improve cross-compilation support [once autoconf 2.70 is widespread]
#1199 opened Jan 4, 2021 by jmarshall • Draft
2
improve compatibility for c++
#1191 opened Dec 11, 2020 by s-wakaba Loading…
6
Update to the depth filtering for mpileup.
#1084 opened Jun 15, 2020 by jkbonfield Loading…
4
Speed up of VCF parsing / writing with FORMAT fields.
#1081 opened May 28, 2020 by jkbonfield Loading…
4
Add method sam_open_write
#1055 opened Apr 6, 2020 by valeriuo Loading…
14
Fixes involving CRAM and header API for long references.
#976 opened Nov 15, 2019 by jkbonfield Loading…
2
sam_format1 : replace if/then with switch/case
#704 opened May 24, 2018 by lindenb Loading…
1
Add mmap hfile backend
#690 opened Apr 23, 2018 by ThomasHickman Loading…
12
Provide more informative error message when encountering unexpected n…
#689 opened Apr 22, 2018 by cinquin Loading…
2
Add hts_open_cb() interface which allows callback function used as data source
#647 opened Jan 10, 2018 by 38 Loading…
12
Abstract ref_to_m5 from cram_io
#589 opened Sep 8, 2017 by ThomasHickman Loading…
@jkbonfield
37
Added "make dist" and "make distcheck" targets.
#533 opened May 15, 2017 by jkbonfield Loading…
Add a flexible array member to the bam1_t struct to facilitate a BAM … breaks-ABI
#393 opened Jun 21, 2016 by nathanweeks Loading…
1
IAM role support enhancement
#362 opened Mar 28, 2016 by jpiper Loading…
6
vcf.h: Remove const specifiers that are not honoured
#274 opened Sep 22, 2015 by noporpoise Loading…
6
[DISCUSS] Add HTS_PARSE_* parsing flags
#260 opened Aug 26, 2015 by jmarshall Loading… wishlist
12
for creating indexing file in samtools merge D2: Moderate P2: Desirable
#193 opened Mar 25, 2015 by ionzhangj8 Loading… wishlist
ProTip! Follow long discussions with comments:>50.