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@rsinghlab

Singh Lab @ Brown

Repository for projects developed in the lab

Popular repositories

  1. pyaging pyaging Public

    A Python-based compendium of GPU-optimized aging clocks.

    Jupyter Notebook 73 4

  2. MADDi MADDi Public

    This repository is for the Multimodal Alzheimer’s Disease Diagnosis framework (MADDi).

    Jupyter Notebook 65 10

  3. SCOT SCOT Public

    Gromov-Wasserstein based optimal transport for aligning single-cell multi-omics data

    Jupyter Notebook 62 14

  4. AltumAge AltumAge Public

    Jupyter Notebook 26 9

  5. GNN-Tumor-Seg GNN-Tumor-Seg Public

    Using Graph Neural Networks to Segment MRIs of Brain Tumors

    Python 16 3

  6. GrapHiC GrapHiC Public

    A graph neural network based approach to impute missing Hi-C reads.

    Python 6

Repositories

Showing 10 of 19 repositories
  • scNODE Public

    scNODE: Generative Model for Temporal Single Cell Transcriptomic Data Prediction

    Jupyter Notebook 6 MIT 1 0 0 Updated Apr 16, 2024
  • pyaging Public

    A Python-based compendium of GPU-optimized aging clocks.

    Jupyter Notebook 73 BSD-3-Clause 4 1 0 Updated Apr 14, 2024
  • scGrapHiC Public

    A graph deconvolution approach to predict Hi-C contact map from pseudo-bulk scRNA-seq.

    Python 2 0 1 0 Updated Apr 1, 2024
  • HistoneClocks Public

    This repository contains the code and data to reproduce the results of our paper entitled "Histone mark age of human tissues and cells".

    Jupyter Notebook 2 MIT 0 0 0 Updated Mar 19, 2024
  • AltumAge Public
    Jupyter Notebook 26 9 1 0 Updated Feb 23, 2024
  • OvO Public
    Jupyter Notebook 0 MIT 0 0 0 Updated Feb 1, 2024
  • SCOT Public

    Gromov-Wasserstein based optimal transport for aligning single-cell multi-omics data

    Jupyter Notebook 62 MIT 14 3 1 Updated Jan 25, 2024
  • scRNAseq_Coexpression_Benchmark Public

    A benchmark of existing gene co-expression estimator on scRNA-seq data.

    HTML 2 MIT 0 1 0 Updated Oct 11, 2023
  • CliniqIR Public

    Code for the paper: Unsupervised Diagnostic Decision Support via Information Retrieval

    Python 0 1 0 0 Updated Oct 9, 2023
  • GrapHiC Public

    A graph neural network based approach to impute missing Hi-C reads.

    Python 6 0 1 0 Updated Jul 28, 2023

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