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Merging dev branch #133
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Merging dev branch #133
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Uses the patched validator, see #126 (comment)
fixes documentation, switches to SE version of dplyr::select.
This was referenced Oct 29, 2015
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Hopefully this should address several of the recently discussed issues.
get_metadata()
,get_taxa()
now return much richerdata.frames
instead of named vectors.This is potentially a non-backwards compatible change if scripts use the output of these
functions as lists (How to access the taxon IDs if the NeXML source contains them #129). See updated metadata vignette. This also introduces new dependencies
dplyr
andlazyeval
.nexml_read()
method for URLs, (nexml_read functions complains about "XMLInternalDocument" as an input #123)nex
for nexml elements (Handle alternative namespaces on attribute values #51, Parsing of XML namespace declarations in XML input is incorrect #124, Fixes to get_characters #126). Includes afix server-side on the NeXML validator as well.
nexml_validate()
points to the new validator. (Fixes to get_characters #126)