napari-OMAAS stands for Optical Mapping Acquisition and Analysis Software for panoramic heart imaging
This napari plugin intends to be an analysis and acquisition tool for optical mapping in potentiometric (Vm) or calcium (Ca2+) fluorescence signals obtained from panoramic imaging of intact hearts.
It supports reading images in .sif format and binary files generated from Andor Technologies powered by the sif_parser python module.
:class: warning
This plugin is in early development/experimental stage so expect braking changes and bugs at anytime.
The following example ilustrate how to perform normalization (pixelwise) on a time serie image and plot its 2d profile along the t dimension withing the average data from the ROI selected.
The next example shows how to compute action potential duration in the same image stack.
This napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template.
Contributions are very welcome. Run tests with tox, ensuring the coverage remains the same before you submit a pull request.
Distributed under the terms of the BSD-3 license, "napari-omaas" is free and open source software.
If you encounter any problems, please file an issue and a detailed description.