Popular repositories

1. MURP MURP Public

   A model-based downsampling algorithm for single-cell

   R 8 1

2. CDSKNN CDSKNN Public

   Large-scale single-cell clustering algorithm based on K-means and optimal KNN graph structure

   R 4 1

3. MGPfact.jl MGPfact.jl Public

   Trajectory inference method. It can decompose complex cell trajectories into interpretable transcriptional branching Gaussian processes.

   Julia 1

4. RIPseq-analysis-workflow RIPseq-analysis-workflow Public

   Summarized existing analysis methods for RIP-seq, including alignment, peak calling, and annotation.

   R 1 2

5. MGPfactR MGPfactR Public

   A model-based, unsupervised manifold learning method that factors complex cellular trajectories into interpretable bifurcating Gaussian processes of transcription.

   R 1

6. ti_dbcti ti_dbcti Public

   A docker container for dbcti, mainly for cell trajectory inference analysis of single cell RNA-seq data

   R