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ratan-lab

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sumo sumo Public

Subtyping tool for multi-omic data

Python 12 1
BaitSTR BaitSTR Public

Automate the discovery of exact short tandem repeats (and its flanking region) from Illumina fastq sequences.

C 5 1
indelMINER indelMINER Public

Identify indels from BAM files.

C 2 1
Workflows Workflows Public

WDL workflows

WDL 1

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Showing 10 of 12 repositories

sumo_helper Public
Scripts to add functionality, diagnose problems and augment analyses done using SUMO

R 1 1 0 0 Updated May 10, 2023
BIMS6000_R_activity Public
R activity for the BIMS 6000 course

Lua 0 0 1 0 Updated Apr 18, 2023
CHD_workflow Public

Python 0 MIT 0 0 0 Updated Mar 15, 2023
sumo Public
Subtyping tool for multi-omic data

Python 12 MIT 1 12 0 Updated Jul 6, 2022
Workflows Public
WDL workflows

WDL 1 0 1 0 Updated Mar 29, 2022
indelMINER Public
Identify indels from BAM files.

C 2 MIT 1 5 0 Updated Jan 26, 2022
sumo_analysis Public
Analysis and figures for SUMO manuscript

R 0 GPL-3.0 0 0 0 Updated Dec 6, 2021
BaitSTR Public
Automate the discovery of exact short tandem repeats (and its flanking region) from Illumina fastq sequences.

C 5 MIT 1 1 0 Updated Apr 13, 2020
mecs Public
Implementation of method used in Wong et al. for Error corrected DNA sequencing

Python 0 0 2 0 Updated Nov 13, 2019
rdcleanr Public
Implementation of a single position models to remove bias in NGS

Python 2 MIT 0 1 0 Updated Dec 20, 2018

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