PyBEL Notebooks

This repository contains Jupyter notebooks demonstrating the PyBEL and PyBEL Tools packages.

Cookbook

This directory contains notebooks that address small problems.

This directory contains notebooks that analyze the contents of a BEL graph.

This directory contains notebooks dealing with input/output and data integration.

This directory contains notebooks demonstrating algorithms implemented with PyBEL and NetworkX.

This notebook serves as a style guide for other notebooks in this repository.

The speed and usability of the PyBEL compiler is compared to the two legacy options: bel.rb and the OpenBEL Framework.

This file can be run with python3 -m nose to check that notebooks run to completion.

Name		Name	Last commit message	Last commit date
Latest commit History 110 Commits
algorithms		algorithms
cookbook		cookbook
example_knowledge		example_knowledge
integration		integration
results		results
summary		summary
.gitignore		.gitignore
BEL Compiler Comparison.ipynb		BEL Compiler Comparison.ipynb
BEL to Natural Language.ipynb		BEL to Natural Language.ipynb
Converting BioPAX to BEL.ipynb		Converting BioPAX to BEL.ipynb
Database Comparison - Blobs versus Edge Store.ipynb		Database Comparison - Blobs versus Edge Store.ipynb
Identifying Upstream and Downstream Nodes.ipynb		Identifying Upstream and Downstream Nodes.ipynb
LICENSE		LICENSE
README.md		README.md
Template.ipynb		Template.ipynb
Transfer of Knowledge Through Ontological Relationships.ipynb		Transfer of Knowledge Through Ontological Relationships.ipynb
Visualization Demo.ipynb		Visualization Demo.ipynb
test.py		test.py