Add object regularization for multi-slice reconstruction #743
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| name: Tests | |
| on: | |
| # Trigger the workflow on push or pull request, | |
| # but only for the main branch | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| branches: | |
| - master | |
| - dev | |
| - hotfixes | |
| # Also trigger on page_build, as well as release created events | |
| page_build: | |
| release: | |
| types: # This configuration does not affect the page_build event above | |
| - created | |
| jobs: | |
| build-linux: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| max-parallel: 10 | |
| fail-fast: false | |
| matrix: | |
| python-version: ['3.8','3.9','3.10', '3.11'] | |
| name: Testing with Python ${{ matrix.python-version }} | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Add conda to system path | |
| run: | | |
| # $CONDA is an environment variable pointing to the root of the miniconda directory | |
| echo $CONDA/bin >> $GITHUB_PATH | |
| conda update -n base conda | |
| conda --version | |
| - name: Install dependencies | |
| run: | | |
| # replace python version in core dependencies | |
| sed -i 's/python/python=${{ matrix.python-version }}/' dependencies_core.yml | |
| conda env update --file dependencies_core.yml --name base | |
| conda list | |
| - name: Prepare ptypy | |
| run: | | |
| # Install ptypy | |
| pip install . | |
| - name: Lint with flake8 | |
| run: | | |
| conda install flake8 | |
| # stop the build if there are Python syntax errors or undefined names | |
| flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics | |
| # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide | |
| # flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics | |
| - name: Test with pytest | |
| run: | | |
| conda install pytest | |
| conda install pytest-cov | |
| # pytest ptypy/test -v --doctest-modules --junitxml=junit/test-results.xml --cov=ptypy --cov-report=xml --cov-report=html --cov-config=.coveragerc | |
| pytest -v | |
| # - name: cobertura-report | |
| # if: github.event_name == 'pull_request' && (github.event.action == 'opened' || github.event.action == 'reopened' || github.event.action == 'synchronize') | |
| # uses: 5monkeys/cobertura-action@v7 | |
| # with: | |
| # # The GITHUB_TOKEN for this repo | |
| # repo_token: ${{ secrets.GITHUB_TOKEN }} | |
| # # Path to the cobertura file. | |
| # path: coverage.xml | |
| # # If files with 100% should be skipped from report. | |
| # skip_covered: true | |
| # # Minimum allowed coverage percentage as an integer. | |
| # minimum_coverage: 90 | |
| # only_changed_files: true | |
| # - name: Junit Report to Annotations | |
| # uses: ashley-taylor/junit-report-annotations-action@master | |
| # with: | |
| # # github token | |
| # access-token: ${{ secrets.GITHUB_TOKEN }} | |
| # # glob to junit xml files | |
| # path: junit/test-results.xml | |
| # # include summary annotation | |
| # includeSummary: true | |
| # # max number of failed tests to include | |
| # numFailures: 10 |