PRIDEnav

About

These are a couple of simple python scripts to help you navigate through PRIDE (The Proteomics Identifications Database) [1].

Details

It fetches the most up to date metadata from PRIDE projects to help you navigate, select experiments, and set up your experimental design.

Queried information

Basic data

• Accession ID
• Project title
• Licence
• URL to project

Metadata

• Organisms
• Tissue
• Diseases
• References

How to use

Scripts are written in Python3. To get the most up-to-date information, you can extract the datasets yourself (which takes about 20 minutes).

pip install -r requirements.txt

or

pip3 install -r requirements.txt

then

python run.py

It will save a csv file in the data directory.

If you want to save some time, a snapshot is already saved and available on the data directory for you to use right away.

Enjoy 😉