v2.1.4

Summary

This release enables to start CRISPRme's test via command line, providing users with a more streamlined and efficient testing pipeline. Additionally, this release resolves a bug encountered during indels analysis.

What's Changed

• Fix Indels Analysis Bug: addresses a critical bug related to indels analysis (#49 ).

• Introduce Test Functionality as Command Line: Users can now easily test CRISPRme's functionality via command line, streamlining the testing process and improving usability (#53).

• Fix error on conda build for crisprme test (#55 and #56)

Full Changelog: v2.1.3...v2.1.4

v2.1.3

Summary

This release enables to start CRISPRme's test via command line, providing users with a more streamlined and efficient testing pipeline. Additionally, this release resolves a bug encountered during indels analysis.

What's Changed

• Fix Indels Analysis Bug: addresses a critical bug related to indels analysis (#49 ).
• Introduce Test Functionality as Command Line: Users can now easily test CRISPRme's functionality via command line, streamlining the testing process and improving usability (#53).
• Fix error on conda build for crisprme test (#55 and #56)

Full Changelog: v2.1.2...v2.1.3

CRISPRme - v2.1.2

Summary

• custom targets sorting while merging close targets (command line options --sorting-criteria-scoring and --sorting-criteria)
• print current CRISPRme version from command line
• Fix bug on targets filtering by chromosome, when searching only the reference genome

What's Changed

• Fix guide sorting mm bulges (#46)
• Fix reference only search (#47)

Full Changelog: v2.1.1...v2.1.2

CRISPRme - v2.1.1

This release includes:

• Detailed error tracing (redirected to log_verbose.txt)
• Stop CRISPRme execution when any step fails
• Resume CRISPRme analysis from the failed step (until off-targets search)

update to allow multi-thread post processing

• introduced user defined multi-thread count for many post-processing operations
• solved bug when no annotation file in input

bug fix and zenodo release update

fixed bug with bed type input
new release for zenodo stable

update to reflect website changes

fixed bug with PAM file path
update GUI
fixed bug in visualization
fixed stability of website
increased number of concurrent jobs
update names and download files available
zip files at execution time

release with fix and update gui

v2.0.7

fix bug in indels and snp analysis with misaligned targets

fetaure addition and graphical fix

Included option to check for base editing
fixed and updated GUI

bug fix

Fixed bug in INDELs analysis due to wrong extraction of targets