The spaceMarker package currently contains functions to find marker genes based on the spatial coordiantes for imaging-based spatial transcriptomics technologies including 10x Xenium, NanoString CosMx and Vizgen MERSCOPE.
To install spaceMarker from github, use either of the following commands:
library(devtools)
devtools::install_github("phipsonlab/spaceMarker")In order to view the vignette for spaceMarker use the following command:
browseVignettes("spaceMarker")