Quantification is the problem of estimating the label prevalence from an unlabeled data set. In this repository we provide the code associated with our manuscript, which can be used to reproduce the experiments.
We recommend using Micromamba to set a new Python 3.11 environment. Then, the package can be installed with:
$ pip install -e .
To reproduce the experiments, install Snakemake using the instructions provided. Then, install additional dependencies:
$ pip install -r requirements.txt
The experiments can be reproduced by running:
$ snakemake -c4 -s workflows/WORKFLOW_NAME.smk