Pinned

1. clinical_variant_database clinical_variant_database Public

   Rails application for storing and parsing clinical exome VCF files. Gene annotations can be retrieved via Biomart integration from Ensembl dataset. Originally developed as part of a Masters in Bioi…

   Ruby 10 2

2. variant_parser variant_parser Public

   Selects possible pathogenic variants from an Alamut output

   Ruby 1

3. targeted_sequencing_pipeline targeted_sequencing_pipeline Public

   Targeted sequencing pipeline for the Royal Devon & Exeter Molecular Genetics lab.

   HTML 1

4. mosaic_clusterer mosaic_clusterer Public

   Uses SciKit Learn library's Mean Shift implementation to draw a chart of mosaic variants

   Python

5. virtual_parser virtual_parser Public

   Virtual panel parser with ruleset for pathogenic variants, for use with Cellbase annotated variants

   Clojure

6. gw_meta_analysis_low_muscle_strength gw_meta_analysis_low_muscle_strength Public archive

   Analysis code and processing stages for Genome-Wide meta-analysis of low grip strength in older people.

   R 5