pages-themes · agadau · Nov 15, 2023 · Nov 15, 2023 · Nov 15, 2023 · Nov 15, 2023
diff --git a/.github/CODEOWNERS b/.github/CODEOWNERS
diff --git a/.github/config.yml b/.github/config.yml
diff --git a/.github/no-response.yml b/.github/no-response.yml
diff --git a/.github/settings.yml b/.github/settings.yml
diff --git a/.github/stale.yml b/.github/stale.yml
diff --git a/.github/workflows/ci.yaml b/.github/workflows/ci.yaml
diff --git a/.rubocop.yml b/.rubocop.yml
diff --git a/.travis.yml b/.travis.yml
diff --git a/Alice-Gadau_RockefellerU_CHoltPhoto-368.JPG b/Alice-Gadau_RockefellerU_CHoltPhoto-368.JPG
diff --git a/Gemfile b/Gemfile
diff --git a/Screen Shot 2023-11-15 at 1.36.38 PM.png b/Screen Shot 2023-11-15 at 1.36.38 PM.png
diff --git a/_config.yml b/_config.yml
@@ -1,6 +1,11 @@
-title: Minimal theme
-logo: /assets/img/logo.png
-description: Minimal is a theme for GitHub Pages.
-show_downloads: true
-google_analytics:
+title: Alice Gadau
+logo: "/assets/img/Alice-Gadau_RockefellerU_CHoltPhoto-368.JPG"
+description: >
+  <br>
+  PhD student at The Rockefeller University. For my evolutionary genetics Phd, I studied how invasive species adapt to new environments. I'm excited to apply my skills as a data journalist.
+  <br><br>
+  Expertise: Evolution / Genomics / Neurobiology / Data Visualization
+  <br><br>
+  <a href="https://www.linkedin.com/in/alice-gadau-0365ba152/">LinkedIn</a>
+
 theme: jekyll-theme-minimal
diff --git a/_layouts/default.html b/_layouts/default.html
@@ -14,11 +14,11 @@
   </head>
   <body>
     <div class="wrapper">
-      <header>
+      <header style="text-align: center;">
         <h1><a href="{{ "/" | absolute_url }}">{{ site.title | default: site.github.repository_name }}</a></h1>
 
         {% if site.logo %}
-          <img src="{{site.logo | relative_url}}" alt="Logo" />
+          <img src="{{site.logo | relative_url}}" alt="Logo" style="border-radius: 50%; height: 200px" />
         {% endif %}
 
         <p>{{ site.description | default: site.github.project_tagline }}</p>
@@ -48,7 +48,7 @@ <h1><a href="{{ "/" | absolute_url }}">{{ site.title | default: site.github.repo
         {% if site.github.is_project_page %}
         <p>This project is maintained by <a href="{{ site.github.owner_url }}">{{ site.github.owner_name }}</a></p>
         {% endif %}
-        <p><small>Hosted on GitHub Pages &mdash; Theme by <a href="https://github.com/orderedlist">orderedlist</a></small></p>
+
       </footer>
     </div>
     <script src="{{ "/assets/js/scale.fix.js" | relative_url }}"></script>

diff --git a/_layouts/post.html b/_layouts/post.html
diff --git a/_sass/jekyll-theme-minimal.scss b/_sass/jekyll-theme-minimal.scss
@@ -102,6 +102,7 @@ th {
 
 img {
   max-width:100%;
+  // border-radius: 50%;
 }
 
 kbd {

diff --git a/assets/img/ Ørsted_and_ Ørsted_2018.pdf b/assets/img/ Ørsted_and_ Ørsted_2018.pdf
diff --git a/assets/img/Alice-Gadau_RockefellerU_CHoltPhoto-368.JPG b/assets/img/Alice-Gadau_RockefellerU_CHoltPhoto-368.JPG
diff --git a/assets/img/R_code_for_covid_nyc.html b/assets/img/R_code_for_covid_nyc.html
diff --git a/assets/img/R_code_for_suzukii_distribution.html b/assets/img/R_code_for_suzukii_distribution.html
diff --git a/assets/img/Rcode_PSTH.html b/assets/img/Rcode_PSTH.html
diff --git a/assets/img/Spike_rate_over_time.png b/assets/img/Spike_rate_over_time.png
diff --git a/assets/img/animated_map_loop2.gif b/assets/img/animated_map_loop2.gif
diff --git a/assets/img/behavior_chamber.png b/assets/img/behavior_chamber.png
diff --git a/assets/img/covid_19_death_cases.gif b/assets/img/covid_19_death_cases.gif
diff --git a/assets/img/covid_19_hospitalization_cases.gif b/assets/img/covid_19_hospitalization_cases.gif
diff --git a/assets/img/covid_19_neighborhood_cases.gif b/assets/img/covid_19_neighborhood_cases.gif
diff --git a/assets/img/covid_19_reported_cases.gif b/assets/img/covid_19_reported_cases.gif
diff --git a/assets/img/figure_1.jpeg b/assets/img/figure_1.jpeg
diff --git a/assets/img/image_personal.png b/assets/img/image_personal.png
diff --git a/assets/img/male_and_female_fly.png b/assets/img/male_and_female_fly.png
diff --git a/assets/img/suzukii_europe_distribution.gif b/assets/img/suzukii_europe_distribution.gif
diff --git a/assets/img/suzukii_global_distribution.gif b/assets/img/suzukii_global_distribution.gif
diff --git a/index.md b/index.md
@@ -1,123 +1,69 @@
 ---
 layout: default
 ---
+## Reporting Portfolio 
 
-Text can be **bold**, _italic_, or ~~strikethrough~~.
+<h3 align="center"> <i>Drosophila suzukii</i>'s global distribution</h3>
+<i>D. suzukii</i> is an invasive fruit fly from East and Southeast Asia that lays its eggs in ripe fruit, causing extensive crop damage. In 2018, scientists provided a comprehensive overview of <i>D. suzukii's</i> global distribution [Ørsted and  Ørsted, 2018](https://besjournals.onlinelibrary.wiley.com/doi/full/10.1111/1365-2664.13285). The compiled data are from over 500 documents and include information on <i>D. suzukii's</i> rapid global spread I used this data to visualize the progression of <i>D. suzukii</i>. 
+<p align="center">
+         <img src="assets/img/animated_map_loop2.gif">
+</p>
 
-[Link to another page](./another-page.html).
+<h3 align="center"> Interactive map of <i>Drosophila suzukii</i> global distribution with collection information</h3>
+<p>  Each observation includes information on an observation date and on the abundance of collection. To view additional information, I created an interactive html document. Country names can be viewed when hovering, and labels for <i>D. suzukii's</i> observation date and abundance can be viewed when clicking on an individual dot. </p>
+<p align="center">
+         <img src="/assets/img/suzukii_global_distribution.gif">
+</p>
 
-There should be whitespace between paragraphs.
 
-There should be whitespace between paragraphs. We recommend including a README, or a file with information about your project.
 
-# Header 1
 
-This is a normal paragraph following a header. GitHub is a code hosting platform for version control and collaboration. It lets you and others work together on projects from anywhere.
 
-## Header 2
 
-> This is a blockquote following a header.
->
-> When something is important enough, you do it even if the odds are not in your favor.
 
-### Header 3
+<h3 align="center"> Three Years of COVID-19 in New York City</h3>
+At the beginning of 2020, a new virus (SARS-CoV-2) spread worldwide, causing a global pandemic. COVID-19, the disease caused by SARS-CoV-2, quickly spread through New York City (NYC). To inform public health decisions, NYC officials tracked the case and death rate and publicized their data. I downloaded all the data from [NYC - github](https://github.com/nychealth/coronavirus-data) and created the following figures. 
 
-```js
-// Javascript code with syntax highlighting.
-var fun = function lang(l) {
-  dateformat.i18n = require('./lang/' + l)
-  return true;
-}
-```
 
-```ruby
-# Ruby code with syntax highlighting
-GitHubPages::Dependencies.gems.each do |gem, version|
-  s.add_dependency(gem, "= #{version}")
-end
-```
+<p align="center">
+         <img src="assets/img/covid_19_reported_cases.gif">
+</p>
+<p align="center">
+        <img src="/assets/img/covid_19_death_cases.gif"> 
+ </p>
 
-#### Header 4
+<p align="center">
+        <img src="/assets/img/covid_19_hospitalization_cases.gif"> 
+ </p>
 
-*   This is an unordered list following a header.
-*   This is an unordered list following a header.
-*   This is an unordered list following a header.
-
-##### Header 5
-
-1.  This is an ordered list following a header.
-2.  This is an ordered list following a header.
-3.  This is an ordered list following a header.
-
-###### Header 6
-
-| head1        | head two          | three |
-|:-------------|:------------------|:------|
-| ok           | good swedish fish | nice  |
-| out of stock | good and plenty   | nice  |
-| ok           | good `oreos`      | hmm   |
-| ok           | good `zoute` drop | yumm  |
-
-### There's a horizontal rule below this.
-
-* * *
-
-### Here is an unordered list:
-
-*   Item foo
-*   Item bar
-*   Item baz
-*   Item zip
-
-### And an ordered list:
-
-1.  Item one
-1.  Item two
-1.  Item three
-1.  Item four
-
-### And a nested list:
-
-- level 1 item
-  - level 2 item
-  - level 2 item
-    - level 3 item
-    - level 3 item
-- level 1 item
-  - level 2 item
-  - level 2 item
-  - level 2 item
-- level 1 item
-  - level 2 item
-  - level 2 item
-- level 1 item
-
-### Small image
-
-![Octocat](https://github.githubassets.com/images/icons/emoji/octocat.png)
-
-### Large image
+ <p align="center">
+        <img src="/assets/img/covid_19_neighborhood_cases.gif"> 
+ </p>
+---
 
-![Branching](https://guides.github.com/activities/hello-world/branching.png)
+## Selected graphics from PH.D. thesis project
+For the following graphics, I present the expression (TPM) of 15 genes of interest that were significantly differentially expressed in my RNA-sequencing analysis. For the analysis, I compared the expression rate (how often a gene is transcribed) of different genes between four fly species. 
+<p align="center">
+        <img src="assets/img/figure_1.jpeg"> 
+ </p>
 
+Fly icons and blueprints for a behavior chamber designed for my thesis project. 
 
-### Definition lists can be used with HTML syntax.
 
-<dl>
-<dt>Name</dt>
-<dd>Godzilla</dd>
-<dt>Born</dt>
-<dd>1952</dd>
-<dt>Birthplace</dt>
-<dd>Japan</dd>
-<dt>Color</dt>
-<dd>Green</dd>
-</dl>
+<p align="center">
+  <img src="assets/img/male_and_female_fly.png" width = "350">
+  </p>
+<p align="center">
+  <img src="assets/img/behavior_chamber.png" width = "350"> 
+</p>
 
-```
-Long, single-line code blocks should not wrap. They should horizontally scroll if they are too long. This line should be long enough to demonstrate this.
-```
+Below, I plotted the spike rate of a neuron recorded with single sensillum electrophysiology over time. Neurons spike in response to external stimuli, and the spike rate can be recorded using electrophysiology. Each trace shows the spiking activity of a single fly neuron. The bold colored line is the average of all traces. 
+ <p align="Center">
+        <img src="assets/img/Spike_rate_over_time.png"> 
+ </p>
 
-```
-The final element.
-```
+---
+## Example code with Interactive Output
+- [D. suzukii distribution R code](/assets/img/R_code_for_suzukii_distribution.html) 
+- [COVID-19 NYC R code](assets/img/R_code_for_covid_nyc.html)
+- [Neuron spike rate with statistic analysis](assets/img/Rcode_PSTH.html)