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fix duplicate pipeline versions #9966

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Commits on Apr 22, 2024

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  3. fix: close file (#9964)

    testwill committed Apr 22, 2024
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Commits on Apr 23, 2024

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  2. update det helm chart (#9940)

    The det helm values are in sync now up to commit
    `d5f807da0ecded7d7b4c6afbf37bbfce8d0233f2`. They also include changes
    that have yet to be merged into main but are expected to be released in
    determined `0.31.0`
    
    ---------
    
    Co-authored-by: Jose Molina-Melendez <jose.molina-melendez@hpe.com>
    Co-authored-by: molinamelendezj <molinamelendezj@gmail.com>
    3 people committed Apr 23, 2024
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  3. Migration test

    acohen4 committed Apr 23, 2024
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  6. Fix Det startupHook (#9975)

    Fixes a whitespace issue and will now work with Alphas and RCs
    BOsterbuhr committed Apr 23, 2024
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Commits on Apr 24, 2024

  1. [INT-1234] Refactor to use client MountedRepo state (#9954)

    This PR refactors the backend to remove server MountedRepo state in
    favor of client state. It maintains existing behavior, updates all
    relevant tests, and adds new tests for PollMount.
    emmajsadams committed Apr 24, 2024
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  3. Add a parser for the metadata CLI (#9908)

    This replaces an inflexible parser that's 1 line of code with a more
    complicated one that can parse any valid metadata. I changed the
    "replace" metadata op to `replace` in the CLI. `set` is short, but I can
    never remember it.
    
    The grammar looks like this:
    
    
    ![kvs](https://github.com/pachyderm/pachyderm/assets/2367/d3a2bfdc-2c1b-41ae-bbdc-85051d2d819a)
    
    `add` and `edit` take a `KV`.  `replace` takes a `KVs`.
    
    Double-quoted strings are the same as Go's, except that `\U12345678`
    syntax isn't supported because the spec doesn't explain how it works and
    I don't know how it works.
    
    Single-quoted strings are very simple; they can't have any escapes in
    them.
    
    Our variant of JSON is more liberal than the official JSON spec out of
    convenience. You can now have vertical linefeeds and `\x??` in your
    JSON. You can also have a trailing comma. Finally, you can probably
    write `{"key":"value""key2":"value2"}`.
    
    I have fuzz tested the parser for about 12 hours x 32 cores, because it
    will panic when the parser selects a path that causes the lexer to not
    advance. These are mostly caused by `@@*` ("pick 0 or more of this big
    subobject") directives; that is why an entirely empty KVs is handled by
    checking that `strings.TrimSpaces() == ""`. Allowing empty KVs in the
    grammar is hard to get right without lookahead (which makes error
    messages bad); lookahead is especially bad for this grammar because how
    many tokens you need to look ahead depends on the exact content of
    double-quoted strings (because `(escape | double quoted chars)*` is the
    content of the string and different strings have different numbers of
    tokens). So we avoid lookahead entirely and deal with requring some
    valid data to parse. The JSON parser is also not the ideal
    implementation which is why quirks like omitting commas works. Frankly,
    JSON made its grammar harder to implement than it needed to be to make
    it more restrictive than it needed to be. With all that in mind,
    although we allow a bunch of weird stuff, we don't reject or misparse
    anything valid, so I'm happy.
    jrockway committed Apr 24, 2024
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  6. [PFS-241] Require storageURL if gocdkEnabled: true (#9978)

    Updates the helm deployment templates of `pachd` and `pachw` to require
    `pachd.storage.storageURL` be set if `pachd.storage.gocdkEnabled` is
    true
    
    ---------
    
    Co-authored-by: Fahad Syed <deadbeamNetworks@gmail.com>
    BOsterbuhr and FahadBSyed committed Apr 24, 2024
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  7. [INT-1171] Add Copy Pachyderm File URI command (#9963)

    Based on this notion doc
    https://www.notion.so/Copy-Pachyderm-File-URI-from-Jupyterlab-File-Browser-192a4a8a108548759cc197a010ab94cd
    
    It it is pretty similar to the doc, except I forgot I need to add a case
    that handles lack of clipboard permissions (due to lack of https). There
    isn't really a great way to work around this so it seems like just
    asking the users to copy the text from the notification is a good
    option.
    
    ## With Clipboard permissions
    <img width="353" alt="Screenshot 2024-04-21 at 8 49 29 PM"
    src="https://github.com/pachyderm/pachyderm/assets/401518/fff7b197-b55d-4131-a3ee-3a5ffad5b965">
    
    ## Without Clipboard permissions (only users outside an https context
    will see this)
    <img width="365" alt="Screenshot 2024-04-21 at 8 48 50 PM"
    src="https://github.com/pachyderm/pachyderm/assets/401518/93aa6895-3834-4012-9ade-c420b49ea64e">
    emmajsadams committed Apr 24, 2024
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Commits on Apr 25, 2024

  1. use storageURL for aws release test envs (#9977)

    #9849 broke this, fixing it.
    molinamelendezj committed Apr 25, 2024
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  2. avoid deployTarget=LOCAL (#9990)

    The helm chart now deletes storage configuration if deployTarget=LOCAL.
    So, use CUSTOM.
    jrockway committed Apr 25, 2024
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  3. iter

    acohen4 committed Apr 25, 2024
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  4. Instrument Storage Layer (#9958)

    This is a first pass at instrumenting the storage layer. There's a few
    high level changes you'll generally see throughout this PR:
    1. Child contexts have been passed throughout. Particular areas of focus
    are distributed systems like the task service and low level constructs
    like file set, index, and chunk readers & writers.
    2. Metrics have been added. The metrics vary based on what is relevant,
    but generally we're reporting bytes read/written as well as indicators
    like cache misses vs cache hits, indices skipped vs indices read, and so
    forth.
    
    I'm sure I've missed areas that we want to instrument, but that's fine.
    We can add those in a follow up PR.
    Metrics are visible when running at a 'debug' level.
    
    Here are some snippets of metrics:
    ```json
    {
      "severity": "debug",
      "time": "2024-04-18T19:30:24.935036734Z",
      "logger": "grpc.pfs_v2.API/ModifyFile.fileSetWriter.indexWriter(deletive-index-writer)",
      "caller": "index/writer.go:85",
      "message": "meter: bytes",
      "service": "pfs_v2.API",
      "method": "ModifyFile",
      "command": [
        "pachctl put file images@master -f liberty.jpg"
      ],
      "peer": "127.0.0.1:48528",
      "type": "int",
      "delta": 35,
      "meter": "bytes"
    }
    {
      "severity": "debug",
      "time": "2024-04-18T19:30:24.935196695Z",
      "logger": "grpc.pfs_v2.API/ModifyFile.fileSetWriter.batcher(chunk-batcher).taskChain.upload",
      "caller": "chunk/uploader.go:186",
      "message": "meter: tx_bytes",
      "service": "pfs_v2.API",
      "method": "ModifyFile",
      "command": [
        "pachctl put file images@master -f liberty.jpg"
      ],
      "peer": "127.0.0.1:48528",
      "type": "int",
      "delta": 133858,
      "meter": "tx_bytes"
    }
    {
      "severity": "debug",
      "time": "2024-04-18T19:30:24.954077375Z",
      "logger": "grpc.pfs_v2.API/ModifyFile.fileSetWriter.indexWriter(additive-batched-index-writer)",
      "caller": "index/writer.go:85",
      "message": "meter: bytes",
      "service": "pfs_v2.API",
      "method": "ModifyFile",
      "command": [
        "pachctl put file images@master -f liberty.jpg"
      ],
      "peer": "127.0.0.1:48528",
      "type": "int",
      "delta": 155,
      "meter": "bytes"
    }
    
    ```
    FahadBSyed committed Apr 25, 2024
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  5. iterate

    acohen4 committed Apr 25, 2024
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  6. fix

    acohen4 committed Apr 25, 2024
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  7. latest

    acohen4 committed Apr 25, 2024
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  8. Make collections methods take a context (#9989)

    This reworks the collections package to avoid embedded contexts. This is
    especially important for ReadWrite transactions, which didn't use
    contexts at all. This resulted in many operations, especially related to
    auth, blocking indefinitely when Postgres was broken. That's now fixed.
    
    This replaces PR #9947.
    
    Part of CORE-2246
    jrockway committed Apr 25, 2024
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Commits on Apr 26, 2024

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  2. Bump github.com/docker/docker from 20.10.17+incompatible to 20.10.27+…

    …incompatible (#9710)
    
    Bumps [github.com/docker/docker](https://github.com/docker/docker) from
    20.10.17+incompatible to 20.10.27+incompatible.
    <details>
    <summary>Release notes</summary>
    <p><em>Sourced from <a
    href="https://github.com/docker/docker/releases">github.com/docker/docker's
    releases</a>.</em></p>
    <blockquote>
    <h2>v20.10.27</h2>
    <p>For a full list of pull requests and changes in this release, refer
    to the relevant GitHub milestones:</p>
    <ul>
    <li><a
    href="https://github.com/docker/cli/issues?q=is%3Aclosed+milestone%3A20.10.27">docker/cli,
    20.10.27 milestone</a></li>
    <li><a
    href="https://github.com/moby/moby/issues?q=is%3Aclosed+milestone%3A20.10.27">moby/moby,
    20.10.27 milestone</a></li>
    </ul>
    <h3>Bug Fixes and Enhancements</h3>
    <ul>
    <li>Fix dockerd-rootless-setuptools.sh when user name contains a
    backslash. <a
    href="https://redirect.github.com/moby/moby/pull/46424">moby/moby#46424</a></li>
    <li>Add <code>IP_NF_MANGLE</code> to check-config.sh to the
    &quot;generally required&quot; list in check-config.sh because it is
    required by Swarm. <a
    href="https://redirect.github.com/moby/moby/pull/46674">moby/moby#46674</a></li>
    <li>Fix a deadlock in libnetwork which could prevent containers from
    starting. <a
    href="https://redirect.github.com/moby/moby/pull/46693">moby/moby#46693</a></li>
    <li>Write overlay2 layer metadata atomically. <a
    href="https://redirect.github.com/moby/moby/pull/46705">moby/moby#46705</a></li>
    <li>Support building with Go 1.20. <a
    href="https://redirect.github.com/moby/moby/pull/46694">moby/moby#46694</a>
    <a
    href="https://redirect.github.com/moby/moby/pull/46695">moby/moby#46695</a>
    <a
    href="https://redirect.github.com/moby/moby/pull/46696">moby/moby#46696</a></li>
    </ul>
    <h3>Packaging Updates</h3>
    <ul>
    <li>Update to go1.20.10, golang/org/x/net v0.17.0. <a
    href="https://redirect.github.com/moby/moby/pull/46692">moby/moby#46692</a></li>
    </ul>
    <h3>Security</h3>
    <ul>
    <li>Deny containers access to <code>/sys/devices/virtual/powercap</code>
    by default. This change hardens against <a
    href="https://scout.docker.com/v/CVE-2020-8694">CVE-2020-8694</a>, <a
    href="https://scout.docker.com/v/CVE-2020-8695">CVE-2020-8695</a>, and
    <a href="https://scout.docker.com/v/CVE-2020-12912">CVE-2020-12912</a>,
    and an attack known as <a href="https://platypusattack.com/">the
    PLATYPUS attack</a>. For more details, see <a
    href="https://github.com/moby/moby/security/advisories/GHSA-jq35-85cj-fj4p">advisory</a>,
    <a
    href="https://github.com/moby/moby/commit/81ebe71275768629689a23bc3bca34b3b374a6a6">commit</a>.</li>
    </ul>
    <h2>v20.10.26</h2>
    <h2>20.10.26</h2>
    <p>For a full list of pull requests and changes in this release, refer
    to the relevant GitHub milestones:</p>
    <ul>
    <li><a
    href="https://github.com/docker/cli/issues?q=is%3Aclosed+milestone%3A20.10.26">docker/cli,
    20.10.26 milestone</a></li>
    <li><a
    href="https://github.com/moby/moby/issues?q=is%3Aclosed+milestone%3A20.10.26">moby/moby,
    20.10.26 milestone</a></li>
    </ul>
    <h3>Bug Fixes and Enhancements</h3>
    <ul>
    <li>Support filesystems which do not support extended file attributes
    with the VFS graph driver. <a
    href="https://redirect.github.com/moby/moby/pull/45466">moby/moby#45466</a></li>
    <li>Fix AppArmor profile docker-default <code>/proc/sys</code> rule. <a
    href="https://redirect.github.com/moby/moby/pull/45716">moby/moby#45716</a></li>
    <li>seccomp: always allow <code>name_to_handle_at(2)</code>. <a
    href="https://redirect.github.com/moby/moby/pull/45835">moby/moby#45835</a></li>
    <li>Fix an issue which prevented volumes mounted to a live-restored
    container from being removed. <a
    href="https://redirect.github.com/moby/moby/pull/45840">moby/moby#45840</a></li>
    <li>client: resolve an incompatibility with Go 1.20.6, Go 1.20.7, Go
    1.19.11 and Go 1.19.12. <a
    href="https://redirect.github.com/moby/moby/pull/45972">moby/moby#45972</a></li>
    <li>windows: fix <code>--register-service</code> when executed from
    within binary directory. <a
    href="https://redirect.github.com/moby/moby/pull/46217">moby/moby#46217</a></li>
    </ul>
    <h3>Packaging Updates</h3>
    <ul>
    <li>Update Go to 1.19.12. <a
    href="https://redirect.github.com/moby/moby/pull/46142">moby/moby#46142</a></li>
    <li>Update containerd to v1.6.22. <a
    href="https://redirect.github.com/moby/moby/pull/46105">moby/moby#46105</a></li>
    <li>Update runc to v1.1.8. <a
    href="https://redirect.github.com/moby/moby/pull/46031">moby/moby#46031</a></li>
    <li>Delete Upstart init scripts and clean up sysvinit. <a
    href="https://redirect.github.com/moby/moby/pull/46047">moby/moby#46047</a></li>
    </ul>
    <h2>v20.10.25</h2>
    <h2>Bug fixes and enhancements</h2>
    <ul>
    <li>Fix log loss with the AWSLogs log driver <a
    href="https://redirect.github.com/moby/moby/pull/45349">moby/moby#45349</a></li>
    </ul>
    <!-- raw HTML omitted -->
    </blockquote>
    <p>... (truncated)</p>
    </details>
    <details>
    <summary>Commits</summary>
    <ul>
    <li><a
    href="https://github.com/moby/moby/commit/81ebe71275768629689a23bc3bca34b3b374a6a6"><code>81ebe71</code></a>
    Merge pull request from GHSA-jq35-85cj-fj4p</li>
    <li><a
    href="https://github.com/moby/moby/commit/fb636657a7a322bd5da4270c4d95f037576570b3"><code>fb63665</code></a>
    Merge pull request <a
    href="https://redirect.github.com/docker/docker/issues/46705">#46705</a>
    from thaJeztah/20.10_backport_atomic-layer-data-write</li>
    <li><a
    href="https://github.com/moby/moby/commit/b967d897586ca3e3e8dcd96d9b5712b5ac02bc9f"><code>b967d89</code></a>
    Merge pull request <a
    href="https://redirect.github.com/docker/docker/issues/46692">#46692</a>
    from corhere/backport-20.10/update-x-net-v0.17</li>
    <li><a
    href="https://github.com/moby/moby/commit/2c22bd52808f1c15d8efcdfb8c960f778c439a37"><code>2c22bd5</code></a>
    vendor: golang.org/x/net v0.17.0</li>
    <li><a
    href="https://github.com/moby/moby/commit/d862c21eb2a806ab72069664f6ba5a75006fc843"><code>d862c21</code></a>
    Update to go1.20.10</li>
    <li><a
    href="https://github.com/moby/moby/commit/cb47414f4187aff09c3d49ac93f7a15411c49d11"><code>cb47414</code></a>
    Merge pull request <a
    href="https://redirect.github.com/docker/docker/issues/46696">#46696</a>
    from corhere/backport-20.10/go1.20-enablement</li>
    <li><a
    href="https://github.com/moby/moby/commit/ea4eb7398c8adea7610ea9b0123cf19dad9a7817"><code>ea4eb73</code></a>
    Merge pull request <a
    href="https://redirect.github.com/docker/docker/issues/46695">#46695</a>
    from corhere/backport-20.10/safer-fileinfo</li>
    <li><a
    href="https://github.com/moby/moby/commit/6c523aabaec55e36c0b53f4b03844b377869ce91"><code>6c523aa</code></a>
    hack: fix suppressing Xattrs lint errors</li>
    <li><a
    href="https://github.com/moby/moby/commit/31b837499c2cd62bdd3d4cdfeaf83903dbc27f6b"><code>31b8374</code></a>
    pkg/archive: audit gosec file-traversal lints</li>
    <li><a
    href="https://github.com/moby/moby/commit/8e4485536ba493508afd894beb9f7c2bdbf4df99"><code>8e44855</code></a>
    Remove local fork of archive/tar package</li>
    <li>Additional commits viewable in <a
    href="https://github.com/docker/docker/compare/v20.10.17...v20.10.27">compare
    view</a></li>
    </ul>
    </details>
    <br />
    
    
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    dependabot[bot] and molinamelendezj committed Apr 26, 2024
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  3. update deps with gazelle

    zmajeed committed Apr 26, 2024
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  4. Improve database and RPC logging (#9948)

    This cleans up some logging. WithTx reports its retry attempt number as
    a field instead of being in the logger name, and associates with
    postgres pid and transaction id with any logs that are generated in the
    transaction. This is most useful with query logging enabled. WithTx is
    also a span now, so we can track the duration and success/failure status
    of individual transactions easily.
    
    The GRPC logging interceptor has been split into two parts. The first
    part runs early and creates a context containing the rpc name, request
    id, rpc peer address, etc. This means that any logs that other
    interceptors generate, notably auth, are associated with the RPC. The
    second part announces the start and end of the RPC, and runs after auth,
    so the authenticated username (if any) is always logged here. (The
    username is also logged for any other logs generated by the RPC
    handler.)
    
    This fixes an issue where database operations done as part of
    authorizing the RPC didn't show up with the request ID, etc. (Actually,
    that wouldn't have worked until #9947 anyway, so this is more of a fast
    follow on top of that.)
    
    It should now be possible to associate postgres logs and x-request-id,
    so we can have an end to end view of the system.
    
    Part of CORE-2248
    jrockway committed Apr 26, 2024
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Commits on Apr 29, 2024

  1. fix duplicate pipeline versions

    acohen4 authored and zmajeed committed Apr 29, 2024
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  2. Migration test

    acohen4 authored and zmajeed committed Apr 29, 2024
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  3. iter

    acohen4 authored and zmajeed committed Apr 29, 2024
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  4. iterate

    acohen4 authored and zmajeed committed Apr 29, 2024
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  5. fix

    acohen4 authored and zmajeed committed Apr 29, 2024
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  6. latest

    acohen4 authored and zmajeed committed Apr 29, 2024
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  7. update deps with gazelle

    zmajeed committed Apr 29, 2024
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  8. Configuration menu
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