Test building intel driver version...

.github/workflows/docker-image-intel.yml

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+name: Docker Image Test Build - Intel drivers
+
+on:
+  push:
+    branches: [ master, dev* ]
+  pull_request:
+    branches: [ master, dev* ]
+
+jobs:
+
+  build:
+
+    runs-on: ubuntu-latest
+
+    steps:
+    - uses: actions/checkout@v3
+
+    - name: Build the Docker image
+      run: |
+        chmod a+w output/
+        ls -alt
+        ./build_intel.sh
+
+    - name: Info on Docker images
+      run: |
+        docker -v
+        docker images
+
+    - name: Run the Docker image
+      run: |
+        ./run.sh
+
+    - name: Info on generated files
+      run: |
+        ls -alt
+        ls -alt output
+        ls -alt output/*
+        more output/*/report.json

Dockerfile_intel

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+FROM ubuntu:22.04
+
+LABEL maintainer="David Lung (lungdm@gmail.com); Padraig Gleeson (p.gleeson@gmail.com)"
+
+ARG USR=ow
+ENV USER=$USR
+
+RUN apt-get update && \
+  apt-get upgrade -y && \
+  apt-get dist-upgrade -y
+
+RUN mkdir -p /etc/sudoers.d && \
+  export uid=1000 gid=1000 && \
+  mkdir -p /home/$USER && \
+  echo "$USER:x:${uid}:${gid}:$USER,,,:/home/$USER:/bin/bash" >> /etc/passwd && \
+  echo "$USER:x:${uid}:" >> /etc/group && \
+  echo "$USER ALL=(ALL) NOPASSWD: ALL" > /etc/sudoers.d/$USER && \
+  chmod 0440 /etc/sudoers.d/$USER && \
+  chown ${uid}:${gid} -R /home/$USER
+
+
+ENV DEBIAN_FRONTEND noninteractive # TODO: change
+
+
+################################################################################
+########     Update/install essential libraries
+
+RUN apt-get update && apt-get install -y --no-install-recommends apt-utils \
+  wget nano htop build-essential make git automake autoconf \
+  g++ rpm libtool libncurses5-dev zlib1g-dev bison flex lsb-core \
+  sudo xorg openbox x11-xserver-utils \
+  libxext-dev libncurses-dev python3-dev mercurial \
+  freeglut3-dev libglu1-mesa-dev libglew-dev python3-dev python3-pip python3-lxml  python3-scipy python3-tk \
+  kmod dkms linux-source linux-headers-generic \
+  maven openjdk-8-jdk \
+  python3-setuptools python3-yaml libnuma1 \
+  openmpi-bin  libopenmpi-dev \
+  libgl1-mesa-glx libgl1-mesa-dri libfreetype6-dev \
+  libxft-dev python3-matplotlib unzip ffmpeg xvfb tmux
+
+#RUN  sudo pip install --upgrade pip
+
+RUN sudo usermod -a -G video $USER
+
+#USER $USER
+ENV HOME /home/$USER
+WORKDIR $HOME
+
+#### TODO: check that this is the best way to switch to py3...
+RUN  sudo update-alternatives --install /usr/bin/python python /usr/bin/python3 10
+RUN  sudo update-alternatives --install /usr/bin/pip pip /usr/bin/pip3 10
+
+
+################################################################################
+########     Install NEURON simulator
+
+RUN pip3 install neuron==8.0.1
+
+
+################################################################################
+########     Install c302 for building neuronal network models
+
+RUN git clone https://github.com/openworm/c302.git && \
+  cd c302 && \
+  git checkout ow-0.9.4 && \
+  sudo pip install .
+
+# Note: pyNeuroML installed with the above library
+
+RUN pip3 install owmeta-core==0.13.5
+RUN owm bundle remote --user add ow 'https://raw.githubusercontent.com/openworm/owmeta-bundles/master/index.json'
+
+
+################################################################################
+########     Install Sibernetic for the worm body model
+
+RUN git clone https://github.com/openworm/sibernetic.git && \
+  cd sibernetic && \
+  git checkout ow-0.9.4  # fixed to a specific branch
+
+
+################################################################################
+########     Set some paths//environment variables
+
+ENV C302_HOME=$HOME/c302/c302
+ENV SIBERNETIC_HOME=$HOME/sibernetic
+ENV PYTHONPATH=$PYTHONPATH:$HOME/c302:$SIBERNETIC_HOME
+
+
+################################################################################
+########     Install Intel OpenCL libraries needed for Sibernetic
+
+# Legacy install of Intel's OpenCL Drivers:
+# ARG INTEL_SDK_VERSION=2017_7.0.0.2511_x64
+
+RUN mkdir intel-opencl-tmp && \
+   cd intel-opencl-tmp && \
+   mkdir intel-opencl && \
+   wget https://github.com/openworm/OpenWorm/raw/dev_inte/SRB5.0_linux64.zip && \
+   unzip SRB5.0_linux64.zip && \
+   tar -C intel-opencl -Jxf intel-opencl-r5.0-63503.x86_64.tar.xz && \
+   tar -C intel-opencl -Jxf intel-opencl-devel-r5.0-63503.x86_64.tar.xz && \
+   tar -C intel-opencl -Jxf intel-opencl-cpu-r5.0-63503.x86_64.tar.xz && \
+   sudo cp -R intel-opencl/* / && \
+   sudo ldconfig && \
+   cd .. && \
+   sudo rm -r intel-opencl-tmp
+
+RUN sudo cp -R /opt/intel/opencl/include/CL /usr/include/ && \
+ sudo apt install -y ocl-icd-opencl-dev vim
+ #sudo ln -s /opt/intel/opencl/libOpenCL.so.1 /usr/lib/libOpenCL.so
+
+
+RUN echo "OpenCL Driver Installation Complete"
+
+
+################################################################################
+########     Build Sibernetic
+
+RUN cd sibernetic && \
+    sed -i -e "s/n2.7/n3.10/g" makefile && \
+    make clean && make all && ldd ./Release/Sibernetic  # Use python 3 libs
+
+
+################################################################################
+########     Copy master python script
+
+# Not working with --chown=$USER:$USER
+COPY ./master_openworm.py $HOME/master_openworm.py
+RUN sudo chown $USER:$USER $HOME/master_openworm.py
+
+RUN echo '\n\nalias cd..="cd .."\nalias h=history\nalias ll="ls -alt"' >> ~/.bashrc
+
+RUN pip list
+
+RUN echo "Built the OpenWorm Docker image!"

build_intel.sh

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+#!/bin/bash
+
+# A version of the docker container using the Intel libraries for OpenCL
+
+version=$(<VERSION) # Read version of Dockerfile from file VERSION
+docker build --platform linux/amd64  "$@" -t "openworm/openworm:$version" -f Dockerfile_intel .