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35 Open 62 Closed
35 Open 62 Closed
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Issues list

Adding Seurat's RPCA method to Benchmarking tasks? enhancement New feature or request
#452 opened May 23, 2024 by andrewdchen
3
Improve trace.txt linking to results enhancement New feature or request
#446 opened Apr 27, 2024 by rcannood
[DR] Port UMAP PCA from v1 enhancement New feature or request
#425 opened Apr 5, 2024 by rcannood
@rcannood
[BI] Add missing control methods bug Something isn't working
#411 opened Mar 18, 2024 by rcannood
3 tasks
1
@mumichae
[DR] Add control methods enhancement New feature or request
#410 opened Mar 18, 2024 by rcannood
@rcannood
Allow running the benchmark workflow with different parameter sets enhancement New feature or request
#405 opened Mar 14, 2024 by rcannood
@rcannood @KaiWaldrant
Add spatially variable genes task task A benchmarking task proposal
#397 opened Mar 12, 2024 by lzj1769
@lzj1769
Widespread inflated metrics for label projection due to leakage bug Something isn't working
#386 opened Feb 22, 2024 by kthorner
2
Add C2C_Source_Target task for v2 task A benchmarking task proposal
#374 opened Feb 14, 2024 by vishnu-vasan
[bat_int] hcla dataset cannot be processed batch_integration relates to task batch_integration bug Something isn't working cellxgene_census Relates to cellxgene_census dataset
#359 opened Feb 5, 2024 by KaiWaldrant
1
[cellxgene] human_retina_cell_atlas dataset cannot be normalized bug Something isn't working cellxgene_census Relates to cellxgene_census dataset dataset_loader Relates to a dataset_loader
#358 opened Feb 5, 2024 by KaiWaldrant
Make .var['feature_id'] a required field again
#350 opened Jan 27, 2024 by rcannood
Make .var['feature_id'] a required field
#349 opened Jan 27, 2024 by rcannood
[bat_int] cell cycle genes not in adata for cellxgene_census dataset batch_integration relates to task batch_integration bug Something isn't working
#331 opened Jan 8, 2024 by KaiWaldrant
1
3
methods benchmark out of storage bug Something isn't working
#330 opened Jan 8, 2024 by KaiWaldrant
update run_and_check_adata.py test enhancement New feature or request
#296 opened Nov 30, 2023 by KaiWaldrant
Revising open problem task structure documentation Improvements or additions to documentation enhancement New feature or request
#292 opened Nov 29, 2023 by mumichae
1
Adding more data from Cell Census for batch integration enhancement New feature or request
#286 opened Nov 22, 2023 by mumichae
1
[batch_int] Revamp control methods enhancement New feature or request
#285 opened Nov 16, 2023 by rcannood
@mumichae
3
[batch_int] fastmnn_feature fail batch_integration relates to task batch_integration bug Something isn't working
#270 opened Oct 18, 2023 by KaiWaldrant v2 (migration)
1
Add treatment condition to dataset pipeline enhancement New feature or request
#252 opened Oct 7, 2023 by rcannood
main_build CI fails bug Something isn't working viash
#245 opened Oct 5, 2023 by KaiWaldrant
Port cell cell communication task from OpenProblemsv1 to OpenProblemsv2 enhancement New feature or request help wanted Extra attention is needed
#241 opened Oct 4, 2023 by rcannood
7 tasks
[bat_int] Lisi indices file not found on nf-tower batch_integration relates to task batch_integration bug Something isn't working
#237 opened Sep 28, 2023 by KaiWaldrant future-work
@mumichae
4
Add spatial decomposition task task A benchmarking task proposal
#224 opened Aug 30, 2023 by danielStrobl
25 tasks
2
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